Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   D4L20_RS00010 Genome accession   NZ_CP032899
Coordinates   1597..3036 (+) Length   479 a.a.
NCBI ID   WP_139549089.1    Uniprot ID   -
Organism   Helicobacter pylori strain 478-A-EK1     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L20_RS00005 dnaA 1..1368 (+) 1368 WP_139549088.1 chromosomal replication initiator protein DnaA -
  D4L20_RS00010 comH 1597..3036 (+) 1440 WP_139549089.1 competence protein Machinery gene
  D4L20_RS00020 - 3216..3968 (+) 753 WP_000767563.1 exodeoxyribonuclease III -
  D4L20_RS00025 - 3965..4600 (-) 636 WP_139549090.1 outer membrane protein -
  D4L20_RS00030 - 4604..4948 (-) 345 WP_139549091.1 hypothetical protein -
  D4L20_RS00035 recG 5030..6901 (+) 1872 WP_139549092.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54926.84 Da        Isoelectric Point: 6.6633

>NTDB_id=320049 D4L20_RS00010 WP_139549089.1 1597..3036(+) (comH) [Helicobacter pylori strain 478-A-EK1]
MRKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHAHQMPSLNAPMQKPQNKPHSSQQPPQNFSYPEPKLGSKNSKNSLLQPL
AIPSKTSPTNETQTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTSNTDISENNESNENRDNVEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQIATDITPCDYSTAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFAILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQIEPTFYETSELAYSSTRKSEITQNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=320049 D4L20_RS00010 WP_139549089.1 1597..3036(+) (comH) [Helicobacter pylori strain 478-A-EK1]
ATGAGAAAATCCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCCAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAGATTGTTTTTTCTTCAAAAGA
ATTGAAAGAATCGCACGCACACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAGCCCCATTCATCGC
AACAACCTCCTCAAAACTTTTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GCAATTCCTAGCAAAACAAGCCCCACTAACGAAACTCAAACGCCAACAAACGACACCAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCTCTAACACTGATATTA
GTGAAAACAATGAAAGCAATGAAAATAGGGATAATGTGGAAAAACAAGCCATTAGAGATCCTAATATTAAGGAATTTGCG
TGCGGAAAGTGGGTCTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GATTGCGACAGACATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAAATCATTACCCCTTATACTAAAA
TCTCCGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTCGCCATTCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGAGCTAGAGCGCGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCATGGGAAAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCGTATATGAACGCCCCAAACAAGACGATC
AAATAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCAAAACGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTGAACGATATAATCAAAGAGAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTACGCTTTAAAGAAGGAGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CTAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAATGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

97.077

100

0.971

Multiple sequence alignment