Detailed information NTG0320045

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4L56_RS07240
• Genome accession: NZ_CP032898
• Coordinates: 1483599..1484654 (-)
• Length: 351 a.a.
• NCBI ID: WP_139518913.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 479-C-EK2
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1478599..1489654

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4L56_RS07215	-	1479139..1480551 (-)	1413	WP_139518910.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4L56_RS07220	comB10	1480621..1481757 (-)	1137	WP_139518911.1	DNA type IV secretion system protein ComB10	Machinery gene
D4L56_RS07225	comB9	1481750..1482730 (-)	981	WP_139523771.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4L56_RS07230	comB8	1482730..1483473 (-)	744	WP_100959825.1	virB8 family protein	Machinery gene
D4L56_RS07235	comB7	1483470..1483583 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4L56_RS07240	comB6	1483599..1484654 (-)	1056	WP_139518913.1	type IV secretion system protein	Machinery gene
D4L56_RS07245	-	1484662..1485657 (-)	996	WP_139519045.1	PDZ domain-containing protein	-
D4L56_RS07250	-	1485657..1485959 (-)	303	WP_139518914.1	YbaB/EbfC family nucleoid-associated protein	-
D4L56_RS07255	panD	1485971..1486321 (-)	351	WP_108310021.1	aspartate 1-decarboxylase	-
D4L56_RS07260	-	1486311..1488536 (-)	2226	WP_139518915.1	ATP-dependent Clp protease ATP-binding subunit	-
D4L56_RS07265	-	1488536..1488811 (-)	276	WP_139518916.1	ATP-dependent Clp protease adaptor ClpS	-
D4L56_RS07270	-	1488826..1489239 (-)	414	WP_001023008.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39674.62 Da
• Isoelectric Point: 9.0413

>NTDB_id=320045 D4L56_RS07240 WP_139518913.1 1483599..1484654(-) (comB6) [Helicobacter pylori strain 479-C-EK2]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQSFFSASTLLEALLFVGFFVLFNY
ALKNPSRFYELFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYTLSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFVIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=320045 D4L56_RS07240 WP_139518913.1 1483599..1484654(-) (comB6) [Helicobacter pylori strain 479-C-EK2]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAGTTTTTTCAGCGCTAGTACGCTTTTAGAGGCGTTATTATTTGTGGGGTTTTTTGTGCTGTTTAACTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATACCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTTTTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTGTCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACT
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	94.872	100	0.949