Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   D4L56_RS07230 Genome accession   NZ_CP032898
Coordinates   1482730..1483473 (-) Length   247 a.a.
NCBI ID   WP_100959825.1    Uniprot ID   -
Organism   Helicobacter pylori strain 479-C-EK2     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1477730..1488473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L56_RS07210 gmd 1477964..1479109 (-) 1146 WP_139518909.1 GDP-mannose 4,6-dehydratase -
  D4L56_RS07215 - 1479139..1480551 (-) 1413 WP_139518910.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4L56_RS07220 comB10 1480621..1481757 (-) 1137 WP_139518911.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4L56_RS07225 comB9 1481750..1482730 (-) 981 WP_139523771.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4L56_RS07230 comB8 1482730..1483473 (-) 744 WP_100959825.1 virB8 family protein Machinery gene
  D4L56_RS07235 comB7 1483470..1483583 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4L56_RS07240 comB6 1483599..1484654 (-) 1056 WP_139518913.1 type IV secretion system protein Machinery gene
  D4L56_RS07245 - 1484662..1485657 (-) 996 WP_139519045.1 PDZ domain-containing protein -
  D4L56_RS07250 - 1485657..1485959 (-) 303 WP_139518914.1 YbaB/EbfC family nucleoid-associated protein -
  D4L56_RS07255 panD 1485971..1486321 (-) 351 WP_108310021.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28738.95 Da        Isoelectric Point: 8.9604

>NTDB_id=320043 D4L56_RS07230 WP_100959825.1 1482730..1483473(-) (comB8) [Helicobacter pylori strain 479-C-EK2]
MREKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLTNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=320043 D4L56_RS07230 WP_100959825.1 1482730..1483473(-) (comB8) [Helicobacter pylori strain 479-C-EK2]
ATGAGAGAAAAGCCTTTCAACAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTCAGATTGGAGAGGAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATCTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATCTAT
GTGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCCATTGCAGCTAAACTAACGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTATTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGTTACAGCATCACTGAAATC
GCACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

98.785

100

0.988

Multiple sequence alignment