Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D4L56_RS05760 Genome accession   NZ_CP032898
Coordinates   1181178..1181582 (-) Length   134 a.a.
NCBI ID   WP_000599172.1    Uniprot ID   -
Organism   Helicobacter pylori strain 479-C-EK2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1176178..1186582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L56_RS05715 - 1176450..1177289 (-) 840 WP_306821130.1 hypothetical protein -
  D4L56_RS08330 - 1177456..1177653 (-) 198 WP_306821131.1 hypothetical protein -
  D4L56_RS05725 - 1177643..1178428 (-) 786 WP_139518687.1 hypothetical protein -
  D4L56_RS05730 - 1178428..1178809 (-) 382 Protein_1086 DUF1294 domain-containing protein -
  D4L56_RS05735 - 1179112..1179369 (-) 258 WP_180339187.1 lysozyme -
  D4L56_RS08250 - 1179372..1179600 (-) 229 Protein_1088 glycoside hydrolase family protein -
  D4L56_RS05745 - 1179630..1180196 (-) 567 WP_139518690.1 hypothetical protein -
  D4L56_RS05750 - 1180180..1180485 (-) 306 WP_000699933.1 hypothetical protein -
  D4L56_RS05755 - 1180611..1181069 (-) 459 WP_139518691.1 tetratricopeptide repeat protein -
  D4L56_RS05760 dprB 1181178..1181582 (-) 405 WP_000599172.1 Holliday junction resolvase RuvX Machinery gene
  D4L56_RS05765 dprA 1181579..1182379 (-) 801 WP_139518692.1 DNA-processing protein DprA Machinery gene
  D4L56_RS05770 minE 1182386..1182619 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  D4L56_RS05775 minD 1182616..1183422 (-) 807 WP_139518693.1 septum site-determining protein MinD -
  D4L56_RS05780 ilvC 1183446..1184438 (-) 993 WP_139523725.1 ketol-acid reductoisomerase -
  D4L56_RS05790 - 1184696..1185478 (+) 783 WP_139518696.1 NAD+ synthase -
  D4L56_RS05795 - 1185475..1186413 (+) 939 WP_139518697.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15232.72 Da        Isoelectric Point: 9.1637

>NTDB_id=320038 D4L56_RS05760 WP_000599172.1 1181178..1181582(-) (dprB) [Helicobacter pylori strain 479-C-EK2]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQKVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=320038 D4L56_RS05760 WP_000599172.1 1181178..1181582(-) (dprB) [Helicobacter pylori strain 479-C-EK2]
ATGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATTGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTGGTGG
TGGGCAAACCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGCAAGAAAAATAAGAGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAAAAGGTTTTAAAAAATC
ATTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

99.254

100

0.993

Multiple sequence alignment