Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ECSF_RS14820 Genome accession   NC_013654
Coordinates   3033563..3034744 (+) Length   393 a.a.
NCBI ID   WP_001161830.1    Uniprot ID   -
Organism   Escherichia coli SE15     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3028563..3039744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECSF_RS14805 (ECSF_2773) - 3029078..3030754 (+) 1677 WP_001605878.1 polysaccharide biosynthesis/export family protein -
  ECSF_RS14810 (ECSF_2774) kdsB 3030764..3031504 (+) 741 WP_000030761.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ECSF_RS14815 (ECSF_2775) - 3031501..3033528 (+) 2028 WP_000579520.1 capsular polysaccharide biosynthesis protein -
  ECSF_RS14820 (ECSF_2776) kpsS 3033563..3034744 (+) 1182 WP_001161830.1 capsule biosynthesis protein Regulator
  ECSF_RS14825 (ECSF_2777) - 3035043..3036710 (-) 1668 WP_000815689.1 glycosyltransferase -
  ECSF_RS14830 (ECSF_2778) - 3037336..3038481 (-) 1146 WP_000611947.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 46998.23 Da        Isoelectric Point: 10.0932

>NTDB_id=32002 ECSF_RS14820 WP_001161830.1 3033563..3034744(+) (kpsS) [Escherichia coli SE15]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEDGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLSERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNWVYYGGSR

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=32002 ECSF_RS14820 WP_001161830.1 3033563..3034744(+) (kpsS) [Escherichia coli SE15]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GTCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCATCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGACGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTAAGTAAGG
AATATGGCTTAAGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTTAAGACGCAGGTTAATTGGGTTTATTATGGAGGAAGTAGATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.103

98.982

0.397

Multiple sequence alignment