Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FDQ49_RS17400 Genome accession   NZ_CP040105
Coordinates   3689312..3690418 (+) Length   368 a.a.
NCBI ID   WP_022575625.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis M2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3684312..3695418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS17360 (FDQ49_17360) - 3684411..3684734 (+) 324 WP_002050660.1 hypothetical protein -
  FDQ49_RS17365 (FDQ49_17365) grxD 3684781..3685122 (-) 342 WP_000138830.1 Grx4 family monothiol glutaredoxin -
  FDQ49_RS17370 (FDQ49_17370) - 3685350..3686558 (+) 1209 WP_000129946.1 aspartate aminotransferase family protein -
  FDQ49_RS17375 (FDQ49_17375) - 3686610..3687041 (-) 432 WP_002050640.1 CBS domain-containing protein -
  FDQ49_RS17380 (FDQ49_17380) - 3687180..3687554 (-) 375 WP_001087274.1 DUF2750 domain-containing protein -
  FDQ49_RS17385 (FDQ49_17385) - 3687969..3688202 (-) 234 WP_002050673.1 hypothetical protein -
  FDQ49_RS17390 (FDQ49_17390) - 3688418..3688777 (+) 360 WP_002050680.1 hypothetical protein -
  FDQ49_RS17395 (FDQ49_17395) - 3688878..3689204 (+) 327 WP_004708472.1 hypothetical protein -
  FDQ49_RS17400 (FDQ49_17400) pilA 3689312..3690418 (+) 1107 WP_022575625.1 signal recognition particle-docking protein FtsY Machinery gene
  FDQ49_RS17405 (FDQ49_17405) - 3690606..3691202 (+) 597 WP_002050635.1 nitroreductase family protein -
  FDQ49_RS17410 (FDQ49_17410) - 3691414..3692085 (+) 672 WP_022575626.1 YccT family protein -
  FDQ49_RS17415 (FDQ49_17415) - 3692162..3692686 (+) 525 WP_022575627.1 GNAT family N-acetyltransferase -
  FDQ49_RS17420 (FDQ49_17420) - 3692697..3692996 (-) 300 WP_079377014.1 cyd operon YbgE family protein -
  FDQ49_RS17425 (FDQ49_17425) cydX 3692997..3693098 (-) 102 WP_000270276.1 cytochrome bd-I oxidase subunit CydX -
  FDQ49_RS17430 (FDQ49_17430) cydB 3693112..3694257 (-) 1146 WP_022575628.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39975.87 Da        Isoelectric Point: 5.0746

>NTDB_id=320000 FDQ49_RS17400 WP_022575625.1 3689312..3690418(+) (pilA) [Acinetobacter nosocomialis M2]
MQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESLVKQEIKVPEVVETAPSTEPEQPKSGFFGRMKEGLSKTRRNFT
DGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDP
NKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFE
SARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLD
GTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETEK

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=320000 FDQ49_RS17400 WP_022575625.1 3689312..3690418(+) (pilA) [Acinetobacter nosocomialis M2]
ATGCAACAACAATCGAATATGCAAAATAAATTCTTGATAGATGCTGAGATCGGGGATGACGATGTCACATTGCCTAATTT
ACCTGCTATCGATGTTCCTATCGTTGAGTCACTTGTTAAGCAAGAAATAAAAGTACCAGAAGTTGTCGAGACGGCACCTT
CAACTGAGCCAGAGCAACCAAAATCTGGTTTCTTTGGGCGAATGAAAGAAGGTTTAAGCAAAACTCGCCGTAATTTCACC
GATGGTATGGTAAATATCTTAATTGGTGGTAAAGAAATTGATGATGAGCTGCTTGAAGAAGTTGAAGAGCAATTATTAGT
TGCAGATATTGGTGTAGATGCAACAAAAACGATTATTACCAACTTGACTGAACGTACTGCACGTGGCGATTTGATTTATT
CACATTCGCTTTATAAAGCCTTACAAGAAGAGTTGGTTGCTTTACTGGCTCCACGTGTGAAGCCTTTGCATATTGACCCT
AATAAATCACCTTATGTGATTTTAATGGTGGGCGTGAATGGTGTTGGAAAAACAACCACAATTGGTAAACTGGCTAAGCG
TTTACAAGGCGAAGGCAAGAAAGTTATGTTAGCAGCAGGTGACACATTCCGTGCAGCTGCTACTGAACAATTGCAAATTT
GGGGTGAGCGTAACGACATTGCTGTTGTCGCTCAAGGCCATGGTGCAGATAGTGCTTCGGTTATCTTCGATGCTTTTGAA
AGTGCACGTGCTAAAGGTATTGATGTGTTAATTGCAGATACCGCAGGTCGTTTACATAACAAAAGTAACTTAATGGAAGA
GCTTAAGAAAGTTAAGCGTGTTATGCAGAAAATTGATGCTACGGCACCTCATGAAATTATGTTAGTAGTAGATGCAGGTA
CGGGGCAAAATGCAATTAACCAAGTACAAGAATTTGATCAAGCAGTAGGTTTAACTGGTATTACTATTACTAAGTTGGAC
GGCACTGCAAAAGGTGGTGTACTGTTTAATATTGCTAGTCGTACTCATGTACCAATTCGTTTCATTGGTGTGGGTGAAAA
AATTGATGATTTAAGACCGTTCTCGGCAAAATCATTTGTAGCGGCATTATTTGAAACAGAAAAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(165-364)

SRP54-type protein, helical bundle domain (SRP54_N)

(83-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.713

87.228

0.451