Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   FDQ49_RS12665 Genome accession   NZ_CP040105
Coordinates   2668296..2668811 (-) Length   171 a.a.
NCBI ID   WP_016804645.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis M2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2663296..2673811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS12640 (FDQ49_12640) - 2663837..2665480 (+) 1644 WP_022575688.1 nitrite/sulfite reductase -
  FDQ49_RS12645 (FDQ49_12645) - 2665473..2665958 (+) 486 WP_017394128.1 DUF934 domain-containing protein -
  FDQ49_RS12650 (FDQ49_12650) - 2666037..2666390 (+) 354 WP_002051463.1 DMT family transporter -
  FDQ49_RS12655 (FDQ49_12655) - 2666443..2666886 (-) 444 WP_002051396.1 VOC family protein -
  FDQ49_RS12660 (FDQ49_12660) - 2667012..2668187 (-) 1176 WP_004885343.1 thiolase family protein -
  FDQ49_RS12665 (FDQ49_12665) fimT 2668296..2668811 (-) 516 WP_016804645.1 GspH/FimT family pseudopilin Machinery gene
  FDQ49_RS12670 (FDQ49_12670) omp38 2669191..2670240 (+) 1050 WP_022575689.1 outer membrane protein Omp38 -
  FDQ49_RS18070 - 2670365..2670523 (-) 159 WP_004712046.1 hypothetical protein -
  FDQ49_RS12675 (FDQ49_12675) - 2670527..2671732 (-) 1206 WP_022575690.1 RtcB family protein -
  FDQ49_RS12680 (FDQ49_12680) - 2672010..2673470 (-) 1461 WP_002051328.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19410.56 Da        Isoelectric Point: 8.5007

>NTDB_id=319988 FDQ49_RS12665 WP_016804645.1 2668296..2668811(-) (fimT) [Acinetobacter nosocomialis M2]
MFRSPGFTIVELSITLVILVIMSVIAIPLYHQFMASVELKNTSRVLTIHIQKAKSDAIIQHKNIVLCPSSDQVICNTDWN
KHLISFVDSNRNLQHDLNEELLTSIDLNHTYGSMKLQRFGKKQNSIVFQGSSGLPIESNGSFIYCSYDQLKNFKLVLSKM
GHVRVEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=319988 FDQ49_RS12665 WP_016804645.1 2668296..2668811(-) (fimT) [Acinetobacter nosocomialis M2]
ATGTTTAGATCTCCTGGTTTTACTATAGTTGAGCTCTCTATAACCCTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAATTAAAAAATACTTCGCGTGTACTCACAATTCATATACAAAAAGCCA
AATCGGACGCAATTATTCAACATAAGAACATTGTTCTGTGTCCAAGTTCAGATCAGGTAATCTGTAATACAGATTGGAAT
AAACACTTAATCAGCTTCGTAGATAGTAACCGCAACCTACAGCATGATTTAAATGAAGAATTATTAACCTCTATAGATCT
TAACCATACTTATGGTTCTATGAAATTACAACGTTTTGGTAAAAAACAAAATAGTATTGTTTTTCAAGGAAGCTCGGGAC
TTCCAATCGAGTCTAATGGTAGTTTTATTTACTGTTCTTATGATCAGCTTAAAAATTTTAAATTAGTTCTTAGCAAAATG
GGGCATGTGCGTGTCGAAGAATTAAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(49-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427