Detailed information NTG0031998

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECSF_RS13575
• Genome accession: NC_013654
• Coordinates: 2759839..2760831 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli SE15
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2754839..2765831

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECSF_RS13555 (ECSF_2533)	ygbM	2755477..2756253 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
ECSF_RS13560 (ECSF_2534)	ygbN	2756342..2757706 (+)	1365	WP_000104433.1	GntP family transporter	-
ECSF_RS13565 (ECSF_2535)	-	2757849..2758892 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ECSF_RS13570 (ECSF_2536)	-	2759117..2759668 (+)	552	WP_001179444.1	flavodoxin family protein	-
ECSF_RS13575 (ECSF_2537)	rpoS	2759839..2760831 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ECSF_RS13580 (ECSF_2538)	nlpD	2760894..2761988 (-)	1095	WP_348226087.1	murein hydrolase activator NlpD	-
ECSF_RS13585 (ECSF_2539)	pcm	2762173..2762799 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ECSF_RS13590 (ECSF_2540)	surE	2762793..2763554 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ECSF_RS13595 (ECSF_2541)	truD	2763535..2764584 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ECSF_RS13600 (ECSF_2542)	ispF	2764581..2765060 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECSF_RS13605 (ECSF_2543)	ispD	2765060..2765770 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=31998 ECSF_RS13575 WP_000081550.1 2759839..2760831(-) (rpoS) [Escherichia coli SE15]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=31998 ECSF_RS13575 WP_000081550.1 2759839..2760831(-) (rpoS) [Escherichia coli SE15]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715