Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   D9C08_RS17045 Genome accession   NZ_CP032872
Coordinates   3173570..3174337 (-) Length   255 a.a.
NCBI ID   WP_014480292.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain 2KL1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3168570..3179337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C08_RS17025 (D9C08_17025) ppsR 3168745..3169557 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  D9C08_RS17030 (D9C08_17030) ccpN 3169583..3170221 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  D9C08_RS17035 (D9C08_17035) glyS 3170354..3172393 (-) 2040 WP_014480291.1 glycine--tRNA ligase subunit beta -
  D9C08_RS17040 (D9C08_17040) glyQ 3172386..3173273 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  D9C08_RS17045 (D9C08_17045) recO 3173570..3174337 (-) 768 WP_014480292.1 DNA repair protein RecO Machinery gene
  D9C08_RS17050 (D9C08_17050) yqzL 3174374..3174517 (-) 144 WP_003230053.1 YqzL family protein -
  D9C08_RS17055 (D9C08_17055) era 3174665..3175570 (-) 906 WP_003230051.1 GTPase Era -
  D9C08_RS17060 (D9C08_17060) - 3175551..3175961 (-) 411 WP_014480293.1 cytidine deaminase -
  D9C08_RS17065 (D9C08_17065) unpK 3176080..3176451 (-) 372 WP_014480294.1 diacylglycerol kinase family protein -
  D9C08_RS17070 (D9C08_17070) ybeY 3176432..3176905 (-) 474 WP_014480295.1 rRNA maturation RNase YbeY -
  D9C08_RS17075 (D9C08_17075) pgpH 3176906..3179041 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=319943 D9C08_RS17045 WP_014480292.1 3173570..3174337(-) (recO) [Bacillus subtilis subsp. subtilis strain 2KL1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPLKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=319943 D9C08_RS17045 WP_014480292.1 3173570..3174337(-) (recO) [Bacillus subtilis subsp. subtilis strain 2KL1]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAGAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGCTCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment