Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   D9C08_RS11605 Genome accession   NZ_CP032872
Coordinates   2200990..2201454 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis subsp. subtilis strain 2KL1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2195990..2206454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C08_RS11585 (D9C08_11585) kinA 2196458..2198290 (+) 1833 WP_069837479.1 sporulation histidine kinase KinA -
  D9C08_RS11590 (D9C08_11590) dapX 2198287..2199468 (-) 1182 WP_014479654.1 aminotransferase A -
  D9C08_RS11595 (D9C08_11595) - 2199670..2199831 (-) 162 WP_003245246.1 hypothetical protein -
  D9C08_RS11600 (D9C08_11600) cheV 2200035..2200946 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  D9C08_RS11605 (D9C08_11605) kre 2200990..2201454 (-) 465 WP_003232406.1 YkyB family protein Regulator
  D9C08_RS11610 (D9C08_11610) ykuC 2201580..2202872 (-) 1293 WP_014479656.1 MFS transporter -
  D9C08_RS11615 (D9C08_11615) ltdD 2202948..2203442 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  D9C08_RS11620 (D9C08_11620) ppeE 2203499..2204359 (-) 861 WP_015483175.1 metallophosphoesterase -
  D9C08_RS11625 (D9C08_11625) fadH 2204502..2205266 (+) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=319924 D9C08_RS11605 WP_003232406.1 2200990..2201454(-) (kre) [Bacillus subtilis subsp. subtilis strain 2KL1]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=319924 D9C08_RS11605 WP_003232406.1 2200990..2201454(-) (kre) [Bacillus subtilis subsp. subtilis strain 2KL1]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment