Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FDV79_RS12335 Genome accession   NZ_CP040103
Coordinates   2574431..2575030 (-) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain LVP66     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2569431..2580030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV79_RS12310 (FDV79_13225) - 2569538..2570197 (-) 660 WP_005397228.1 transcriptional regulator -
  FDV79_RS12315 (FDV79_13230) - 2570226..2571503 (-) 1278 WP_140380961.1 serine dehydratase subunit alpha family protein -
  FDV79_RS12320 (FDV79_13235) - 2571519..2571899 (-) 381 WP_005479566.1 RidA family protein -
  FDV79_RS12325 (FDV79_13240) - 2572217..2573476 (+) 1260 WP_005494432.1 amino acid permease -
  FDV79_RS12330 (FDV79_13245) aqpZ 2573682..2574380 (+) 699 WP_005460095.1 aquaporin Z -
  FDV79_RS12335 (FDV79_13250) recR 2574431..2575030 (-) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  FDV79_RS12340 (FDV79_13255) - 2575060..2575389 (-) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  FDV79_RS12345 (FDV79_13260) dnaX 2575472..2577607 (-) 2136 WP_140380959.1 DNA polymerase III subunit gamma/tau -
  FDV79_RS12350 (FDV79_13265) apt 2577616..2578161 (-) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  FDV79_RS12355 (FDV79_13270) - 2578327..2578674 (-) 348 WP_229636801.1 YbaN family protein -
  FDV79_RS23915 (FDV79_13275) - 2578747..2578878 (-) 132 WP_025499569.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=319904 FDV79_RS12335 WP_005460088.1 2574431..2575030(-) (recR) [Vibrio parahaemolyticus strain LVP66]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=319904 FDV79_RS12335 WP_005460088.1 2574431..2575030(-) (recR) [Vibrio parahaemolyticus strain LVP66]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTCGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432

Multiple sequence alignment