Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FDV79_RS00510 Genome accession   NZ_CP040103
Coordinates   113333..114544 (-) Length   403 a.a.
NCBI ID   WP_017449414.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP66     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 108333..119544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV79_RS00480 (FDV79_00530) - 108518..108928 (+) 411 WP_140381210.1 flagellar basal body-associated protein FliL -
  FDV79_RS00485 (FDV79_00535) glpG 108988..109830 (-) 843 WP_140381208.1 rhomboid family intramembrane serine protease GlpG -
  FDV79_RS00490 (FDV79_00540) glpE 109830..110150 (-) 321 WP_005460380.1 thiosulfate sulfurtransferase GlpE -
  FDV79_RS00495 (FDV79_00550) rpoH 110642..111502 (-) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  FDV79_RS00500 (FDV79_00555) ftsX 111678..112646 (-) 969 WP_140381205.1 permease-like cell division protein FtsX -
  FDV79_RS00505 (FDV79_00560) ftsE 112636..113310 (-) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  FDV79_RS00510 (FDV79_00565) pilA 113333..114544 (-) 1212 WP_017449414.1 signal recognition particle-docking protein FtsY Machinery gene
  FDV79_RS00515 (FDV79_00570) rsmD 114768..115367 (+) 600 WP_005455148.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FDV79_RS00520 (FDV79_00575) - 115393..115659 (+) 267 WP_005496405.1 DUF1145 domain-containing protein -
  FDV79_RS00525 (FDV79_00580) - 115713..116297 (-) 585 WP_005455144.1 YhgN family NAAT transporter -
  FDV79_RS00530 (FDV79_00585) - 116417..116638 (-) 222 WP_140138404.1 YecH family metal-binding protein -
  FDV79_RS00535 (FDV79_00590) - 116708..117328 (-) 621 WP_005481960.1 lysoplasmalogenase -
  FDV79_RS00540 - 118063..118242 (+) 180 WP_005458791.1 hypothetical protein -
  FDV79_RS00545 (FDV79_00605) - 118305..118673 (-) 369 WP_005489749.1 hypothetical protein -
  FDV79_RS00550 (FDV79_00610) - 118915..119244 (+) 330 WP_015297474.1 DUF2500 domain-containing protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43909.51 Da        Isoelectric Point: 4.3012

>NTDB_id=319846 FDV79_RS00510 WP_017449414.1 113333..114544(-) (pilA) [Vibrio parahaemolyticus strain LVP66]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQPTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAE
EPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKIINNLTEK
ASRGDLKDGEALYGLLKEEMAEILSKVEQPLDIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAAGDTFRA
AAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSAPHE
IMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFETQEFIDALFS
REE

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=319846 FDV79_RS00510 WP_017449414.1 113333..114544(-) (pilA) [Vibrio parahaemolyticus strain LVP66]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAACAGCCAACCGAAGAGGTTGCTGAGCAAGCGCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GAGCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTCTTCGCTCGCCTTAAGCGCAG
CCTTAGCCGTACGAAAGCAAATATCGGCGCTGGTTTCTTTGGTCTGTTCAGCGGTAAAAAAATCGATGACGACCTATTTG
AAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGACACTACCACAAAAATCATCAACAACCTGACAGAAAAA
GCCTCTCGAGGTGATCTGAAAGATGGCGAAGCCCTTTATGGTCTGCTGAAAGAAGAAATGGCGGAGATTCTATCTAAAGT
AGAACAGCCTCTAGATATCGACAGTAGCAAAACACCTTATGTCATCTTGATGGTTGGTGTGAATGGTGTGGGTAAAACCA
CCACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCAGCTGGCGATACTTTCCGAGCG
GCTGCAGTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCATACTGGCGCAGACAGCGC
ATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCGATACGGCGGGTCGTCTAC
AAAACAAAGCCAACCTAATGGAAGAGCTACGCAAGATTGTACGTGTGATGAAGAAAATTGATGATTCTGCACCACATGAA
ATCATGCTGACGCTGGATGCAGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAGTGATGTAGCTCCTCTAAC
CGGGATTACATTGACTAAGCTGGATGGTACAGCGAAAGGCGGCGTTATTTTCGCTATCGCTGATCAGTTTAGTATTCCAA
TTCGCTACATTGGTGTTGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTTATCGACGCTTTGTTTAGC
CGTGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(119-180)

SRP54-type protein, GTPase domain (SRP54)

(200-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.189

91.811

0.452