Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FDV78_RS15085 Genome accession   NZ_CP040101
Coordinates   3142765..3143493 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain LVP2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3137765..3148493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV78_RS15070 (FDV78_16115) clpC 3138200..3140773 (-) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator
  FDV78_RS15075 (FDV78_16120) pgeF 3140921..3141649 (-) 729 WP_140304088.1 peptidoglycan editing factor PgeF -
  FDV78_RS15080 (FDV78_16125) rluD 3141651..3142628 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FDV78_RS15085 (FDV78_16130) comL 3142765..3143493 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  FDV78_RS15090 (FDV78_16135) - 3143628..3145109 (+) 1482 WP_025623485.1 lytic transglycosylase F -
  FDV78_RS15095 (FDV78_16140) hpf 3145440..3145766 (+) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FDV78_RS15100 (FDV78_16145) pheA 3146010..3147188 (+) 1179 WP_005468591.1 prephenate dehydratase -
  FDV78_RS15105 (FDV78_16150) yjjX 3147213..3147746 (+) 534 WP_005497220.1 inosine/xanthosine triphosphatase -
  FDV78_RS15110 (FDV78_16155) trpR 3147795..3148106 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=319832 FDV78_RS15085 WP_005460312.1 3142765..3143493(+) (comL) [Vibrio parahaemolyticus strain LVP2]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=319832 FDV78_RS15085 WP_005460312.1 3142765..3143493(+) (comL) [Vibrio parahaemolyticus strain LVP2]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCTACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCCTGGATCGCAGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCTGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405

Multiple sequence alignment