Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FDV78_RS05635 Genome accession   NZ_CP040101
Coordinates   1199525..1200124 (+) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain LVP2     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1194525..1205124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV78_RS25710 (FDV78_06020) - 1195659..1195790 (+) 132 WP_005380608.1 hypothetical protein -
  FDV78_RS05615 (FDV78_06025) - 1195863..1196210 (+) 348 WP_023585236.1 YbaN family protein -
  FDV78_RS05620 (FDV78_06030) apt 1196376..1196921 (+) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  FDV78_RS05625 (FDV78_06035) dnaX 1196930..1199083 (+) 2154 WP_179000514.1 DNA polymerase III subunit gamma/tau -
  FDV78_RS05630 (FDV78_06040) - 1199166..1199495 (+) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  FDV78_RS05635 (FDV78_06045) recR 1199525..1200124 (+) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  FDV78_RS05640 (FDV78_06050) aqpZ 1200175..1200873 (-) 699 WP_005460095.1 aquaporin Z -
  FDV78_RS05645 (FDV78_06055) - 1201080..1202339 (-) 1260 WP_005494432.1 amino acid permease -
  FDV78_RS05650 (FDV78_06060) - 1202657..1203037 (+) 381 WP_005479566.1 RidA family protein -
  FDV78_RS05655 (FDV78_06065) - 1203053..1204330 (+) 1278 WP_005479508.1 serine dehydratase subunit alpha family protein -
  FDV78_RS05660 (FDV78_06070) - 1204359..1205018 (+) 660 WP_179000515.1 transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=319794 FDV78_RS05635 WP_005460088.1 1199525..1200124(+) (recR) [Vibrio parahaemolyticus strain LVP2]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=319794 FDV78_RS05635 WP_005460088.1 1199525..1200124(+) (recR) [Vibrio parahaemolyticus strain LVP2]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTCGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432