Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   D9C18_RS20785 Genome accession   NZ_CP032865
Coordinates   3879161..3879781 (-) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis subsp. subtilis strain N3-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3874161..3884781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C18_RS20765 (D9C18_20765) dnaD 3874452..3875150 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  D9C18_RS20770 (D9C18_20770) nth 3875169..3875828 (+) 660 WP_009967580.1 endonuclease III -
  D9C18_RS20775 (D9C18_20775) ypoC 3875825..3876319 (+) 495 WP_009967579.1 YpoC family protein -
  D9C18_RS20780 (D9C18_20780) ponA 3876395..3879139 (-) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  D9C18_RS20785 (D9C18_20785) recU 3879161..3879781 (-) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  D9C18_RS20790 (D9C18_20790) yppC 3879822..3880784 (+) 963 WP_033881326.1 DUF2515 domain-containing protein -
  D9C18_RS20795 (D9C18_20795) sspM 3880809..3880913 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  D9C18_RS20800 (D9C18_20800) yppD 3881112..3881357 (+) 246 WP_004398488.1 YppD family protein -
  D9C18_RS20805 (D9C18_20805) yppE 3881403..3881774 (+) 372 WP_003246080.1 YppE family protein -
  D9C18_RS20810 (D9C18_20810) yppF 3881813..3882001 (-) 189 WP_003230690.1 YppF family protein -
  D9C18_RS20815 (D9C18_20815) sppG 3882188..3882565 (+) 378 WP_004398696.1 YppG family protein -
  D9C18_RS20820 (D9C18_20820) ypqA 3882586..3883005 (-) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  D9C18_RS20825 (D9C18_20825) ptsA 3883143..3883649 (+) 507 WP_029726788.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=319764 D9C18_RS20785 WP_014480105.1 3879161..3879781(-) (recU) [Bacillus subtilis subsp. subtilis strain N3-1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=319764 D9C18_RS20785 WP_014480105.1 3879161..3879781(-) (recU) [Bacillus subtilis subsp. subtilis strain N3-1]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment