Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | D9C18_RS18905 | Genome accession | NZ_CP032865 |
| Coordinates | 3553617..3554027 (+) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis subsp. subtilis strain N3-1 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3530731..3558660 | 3553617..3554027 | within | 0 |
Gene organization within MGE regions
Location: 3530731..3558660
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D9C18_RS18745 (D9C18_18745) | - | 3530731..3530911 (+) | 181 | Protein_3614 | hypothetical protein | - |
| D9C18_RS23090 | - | 3531220..3531450 (+) | 231 | WP_224588644.1 | hypothetical protein | - |
| D9C18_RS18755 (D9C18_18755) | - | 3531595..3531843 (+) | 249 | Protein_3616 | hypothetical protein | - |
| D9C18_RS18760 (D9C18_18760) | - | 3531806..3531928 (+) | 123 | Protein_3617 | RusA family crossover junction endodeoxyribonuclease | - |
| D9C18_RS18765 (D9C18_18765) | - | 3532011..3532163 (+) | 153 | WP_049832653.1 | XtrA/YqaO family protein | - |
| D9C18_RS18770 (D9C18_18770) | - | 3532302..3532568 (-) | 267 | WP_033881358.1 | hypothetical protein | - |
| D9C18_RS18775 (D9C18_18775) | - | 3533185..3533664 (+) | 480 | WP_014480344.1 | hypothetical protein | - |
| D9C18_RS23095 | - | 3533819..3533884 (+) | 66 | Protein_3621 | hypothetical protein | - |
| D9C18_RS22715 | - | 3534057..3534362 (-) | 306 | WP_123772463.1 | hypothetical protein | - |
| D9C18_RS22790 | terS | 3534489..3535054 (+) | 566 | Protein_3623 | phage terminase small subunit | - |
| D9C18_RS18785 (D9C18_18785) | - | 3535052..3535488 (+) | 437 | Protein_3624 | phage tail tube protein | - |
| D9C18_RS18790 (D9C18_18790) | - | 3535775..3535861 (-) | 87 | WP_072592549.1 | putative holin-like toxin | - |
| D9C18_RS23100 | - | 3536039..3536136 (+) | 98 | Protein_3626 | N-acetylmuramoyl-L-alanine amidase | - |
| D9C18_RS18800 (D9C18_18800) | istB | 3536454..3537212 (-) | 759 | WP_014479891.1 | IS21-like element helper ATPase IstB | - |
| D9C18_RS18805 (D9C18_18805) | istA | 3537209..3538756 (-) | 1548 | WP_014480339.1 | IS21 family transposase | - |
| D9C18_RS18815 (D9C18_18815) | - | 3539597..3539887 (-) | 291 | WP_014480337.1 | contact-dependent growth inhibition system immunity protein | - |
| D9C18_RS18820 (D9C18_18820) | atxG | 3539997..3540574 (-) | 578 | Protein_3630 | suppressor of fused domain protein | - |
| D9C18_RS18825 (D9C18_18825) | - | 3540842..3541075 (-) | 234 | WP_224588641.1 | hypothetical protein | - |
| D9C18_RS22720 | - | 3541164..3541367 (+) | 204 | WP_123772462.1 | hypothetical protein | - |
| D9C18_RS18830 (D9C18_18830) | - | 3541675..3542154 (-) | 480 | WP_224588637.1 | hypothetical protein | - |
| D9C18_RS18835 (D9C18_18835) | cdiI | 3542259..3542618 (-) | 360 | WP_014480334.1 | ribonuclease toxin immunity protein CdiI | - |
| D9C18_RS18840 (D9C18_18840) | - | 3542715..3543167 (-) | 453 | WP_014480333.1 | SMI1/KNR4 family protein | - |
| D9C18_RS18845 (D9C18_18845) | - | 3543266..3543706 (-) | 441 | WP_014480332.1 | SMI1/KNR4 family protein | - |
| D9C18_RS18855 (D9C18_18855) | - | 3544109..3544396 (-) | 288 | WP_014480331.1 | hypothetical protein | - |
| D9C18_RS23210 (D9C18_18860) | - | 3544410..3546336 (-) | 1927 | Protein_3638 | T7SS effector LXG polymorphic toxin | - |
| D9C18_RS18865 (D9C18_18865) | - | 3546518..3547645 (+) | 1128 | WP_014480328.1 | Rap family tetratricopeptide repeat protein | - |
| D9C18_RS18875 (D9C18_18875) | - | 3548385..3548780 (-) | 396 | WP_014480327.1 | VOC family protein | - |
| D9C18_RS18880 (D9C18_18880) | - | 3549722..3550612 (-) | 891 | WP_014480326.1 | LysR family transcriptional regulator | - |
| D9C18_RS18885 (D9C18_18885) | fumC | 3550779..3552167 (+) | 1389 | WP_014480325.1 | class II fumarate hydratase | - |
| D9C18_RS23120 | - | 3552386..3552598 (+) | 213 | Protein_3643 | recombinase family protein | - |
| D9C18_RS18895 (D9C18_18895) | - | 3552595..3552693 (-) | 99 | WP_031600702.1 | hypothetical protein | - |
| D9C18_RS18900 (D9C18_18900) | sigK | 3552693..3553421 (-) | 729 | WP_013308023.1 | RNA polymerase sporulation sigma factor SigK | - |
| D9C18_RS18905 (D9C18_18905) | nucA/comI | 3553617..3554027 (+) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| D9C18_RS18910 (D9C18_18910) | yqeB | 3554060..3554782 (-) | 723 | WP_014480321.1 | hypothetical protein | - |
| D9C18_RS18915 (D9C18_18915) | gnd | 3555033..3555926 (+) | 894 | WP_014480320.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| D9C18_RS18920 (D9C18_18920) | yqeD | 3555945..3556571 (-) | 627 | WP_014480319.1 | TVP38/TMEM64 family protein | - |
| D9C18_RS18925 (D9C18_18925) | cwlH | 3556758..3557510 (+) | 753 | WP_014480318.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| D9C18_RS18930 (D9C18_18930) | yqeF | 3557762..3558493 (+) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=319748 D9C18_RS18905 WP_009967785.1 3553617..3554027(+) (nucA/comI) [Bacillus subtilis subsp. subtilis strain N3-1]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=319748 D9C18_RS18905 WP_009967785.1 3553617..3554027(+) (nucA/comI) [Bacillus subtilis subsp. subtilis strain N3-1]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |