Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FDP11_RS21680 Genome accession   NZ_CP040100
Coordinates   2766088..2766816 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain LVP1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2761088..2771816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP11_RS21665 (FDP11_23280) clpC 2761523..2764096 (-) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator
  FDP11_RS21670 (FDP11_23285) pgeF 2764244..2764972 (-) 729 WP_029865793.1 peptidoglycan editing factor PgeF -
  FDP11_RS21675 (FDP11_23290) rluD 2764974..2765951 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FDP11_RS21680 (FDP11_23295) comL 2766088..2766816 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  FDP11_RS21685 (FDP11_23300) - 2766951..2768432 (+) 1482 WP_323283272.1 lytic transglycosylase F -
  FDP11_RS21690 (FDP11_23305) hpf 2768763..2769089 (+) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FDP11_RS21695 (FDP11_23310) pheA 2769333..2770511 (+) 1179 WP_178982810.1 prephenate dehydratase -
  FDP11_RS21700 (FDP11_23315) yjjX 2770536..2771069 (+) 534 WP_021450232.1 inosine/xanthosine triphosphatase -
  FDP11_RS21705 (FDP11_23320) trpR 2771118..2771429 (-) 312 WP_025628293.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=319733 FDP11_RS21680 WP_005460312.1 2766088..2766816(+) (comL) [Vibrio parahaemolyticus strain LVP1]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=319733 FDP11_RS21680 WP_005460312.1 2766088..2766816(+) (comL) [Vibrio parahaemolyticus strain LVP1]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCTACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405

Multiple sequence alignment