Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   D9C18_RS05465 Genome accession   NZ_CP032865
Coordinates   995977..996771 (-) Length   264 a.a.
NCBI ID   WP_014479217.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain N3-1     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 990977..1001771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C18_RS05430 (D9C18_05430) ephM 991820..992680 (-) 861 WP_014479220.1 epoxide hydrolase EphM -
  D9C18_RS05435 (D9C18_05435) spdL 992667..992999 (-) 333 WP_014479219.1 SdpC immunity protein SpdL -
  D9C18_RS05440 (D9C18_05440) yfhK 993084..993602 (-) 519 WP_014479218.1 SH3 domain-containing protein -
  D9C18_RS05445 (D9C18_05445) yfhJ 993747..994016 (-) 270 WP_003243789.1 YfhJ family protein -
  D9C18_RS05450 (D9C18_05450) sspK 994141..994293 (+) 153 WP_003223241.1 small, acid-soluble spore protein K -
  D9C18_RS05455 (D9C18_05455) yfhI 994325..995518 (-) 1194 WP_003243500.1 MFS transporter -
  D9C18_RS05460 (D9C18_05460) yfhH 995661..995975 (-) 315 WP_003244592.1 YfhH family protein -
  D9C18_RS05465 (D9C18_05465) recX 995977..996771 (-) 795 WP_014479217.1 recombination regulator RecX Regulator
  D9C18_RS05470 (D9C18_05470) yfhF 996860..997771 (+) 912 WP_014479216.1 TIGR01777 family oxidoreductase -
  D9C18_RS05475 (D9C18_05475) yfhE 997826..997936 (+) 111 WP_003223230.1 YfhE family protein -
  D9C18_RS05480 (D9C18_05480) yfhD 998002..998193 (+) 192 WP_014479215.1 YfhD family protein -
  D9C18_RS05485 (D9C18_05485) yfhC 998232..998816 (-) 585 WP_033881364.1 nitroreductase -
  D9C18_RS05490 (D9C18_05490) yfhB 998904..999785 (-) 882 WP_014479213.1 PhzF family phenazine biosynthesis isomerase -
  D9C18_RS05495 (D9C18_05495) sxzA 999900..1000931 (-) 1032 WP_003233568.1 iron ABC transporter permease -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31029.21 Da        Isoelectric Point: 6.6686

>NTDB_id=319709 D9C18_RS05465 WP_014479217.1 995977..996771(-) (recX) [Bacillus subtilis subsp. subtilis strain N3-1]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKEFKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAIK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=319709 D9C18_RS05465 WP_014479217.1 995977..996771(-) (recX) [Bacillus subtilis subsp. subtilis strain N3-1]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAATTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACGG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATTAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.242

100

0.992

Multiple sequence alignment