Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   D9C18_RS04280 Genome accession   NZ_CP032865
Coordinates   784535..785113 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain N3-1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 779535..790113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C18_RS04245 (D9C18_04245) lepB 779542..780048 (-) 507 WP_003233128.1 signal peptidase I -
  D9C18_RS04250 (D9C18_04250) yhjE 780050..780673 (-) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  D9C18_RS04255 (D9C18_04255) - 780825..781196 (+) 372 WP_014476361.1 hypothetical protein -
  D9C18_RS04260 (D9C18_04260) yhjC 781395..781595 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  D9C18_RS04265 (D9C18_04265) yhjB 781592..783061 (+) 1470 WP_014479374.1 sodium:solute symporter -
  D9C18_RS04270 (D9C18_04270) yhjA 783105..783374 (-) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  D9C18_RS04275 (D9C18_04275) yhxD 783591..784490 (+) 900 WP_014479372.1 SDR family oxidoreductase -
  D9C18_RS04280 (D9C18_04280) comK 784535..785113 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  D9C18_RS04285 (D9C18_04285) yhzC 785405..785638 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  D9C18_RS04290 (D9C18_04290) yhxC 785666..786523 (-) 858 WP_014479371.1 SDR family oxidoreductase -
  D9C18_RS04295 (D9C18_04295) comW 786627..788155 (+) 1529 Protein_858 FAD-dependent oxidoreductase -
  D9C18_RS04300 (D9C18_04300) hemAT 788294..789592 (+) 1299 WP_014479367.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=319705 D9C18_RS04280 WP_003245329.1 784535..785113(-) (comK) [Bacillus subtilis subsp. subtilis strain N3-1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=319705 D9C18_RS04280 WP_003245329.1 784535..785113(-) (comK) [Bacillus subtilis subsp. subtilis strain N3-1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment