Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   D9C18_RS02250 Genome accession   NZ_CP032865
Coordinates   416187..416651 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis subsp. subtilis strain N3-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 411187..421651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C18_RS02230 (D9C18_02230) fadH 412375..413139 (-) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -
  D9C18_RS02235 (D9C18_02235) ppeE 413282..414142 (+) 861 WP_003232400.1 metallophosphoesterase -
  D9C18_RS02240 (D9C18_02240) ltdD 414199..414693 (+) 495 WP_072174092.1 L,D-transpeptidase family protein -
  D9C18_RS02245 (D9C18_02245) ykuC 414769..416061 (+) 1293 WP_014479656.1 MFS transporter -
  D9C18_RS02250 (D9C18_02250) kre 416187..416651 (+) 465 WP_003232406.1 YkyB family protein Regulator
  D9C18_RS02255 (D9C18_02255) cheV 416695..417606 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  D9C18_RS02260 (D9C18_02260) - 417810..417971 (+) 162 WP_003245246.1 hypothetical protein -
  D9C18_RS02265 (D9C18_02265) dapX 418173..419354 (+) 1182 WP_014479654.1 aminotransferase A -
  D9C18_RS02270 (D9C18_02270) kinA 419351..421180 (-) 1830 WP_014479653.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=319693 D9C18_RS02250 WP_003232406.1 416187..416651(+) (kre) [Bacillus subtilis subsp. subtilis strain N3-1]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=319693 D9C18_RS02250 WP_003232406.1 416187..416651(+) (kre) [Bacillus subtilis subsp. subtilis strain N3-1]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment