Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   D9C17_RS18225 Genome accession   NZ_CP032863
Coordinates   3393012..3393590 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain N2-2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3388012..3398590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C17_RS18205 (D9C17_18205) hemAT 3388532..3389830 (-) 1299 WP_014479367.1 heme-based aerotactic transducer HemAT -
  D9C17_RS18210 (D9C17_18210) comW 3389969..3391497 (-) 1529 Protein_3497 FAD-dependent oxidoreductase -
  D9C17_RS18215 (D9C17_18215) yhxC 3391601..3392458 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  D9C17_RS18220 (D9C17_18220) yhzC 3392486..3392719 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  D9C17_RS18225 (D9C17_18225) comK 3393012..3393590 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  D9C17_RS18230 (D9C17_18230) yhxD 3393635..3394534 (-) 900 WP_014479372.1 SDR family oxidoreductase -
  D9C17_RS18235 (D9C17_18235) yhjA 3394751..3395020 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  D9C17_RS18240 (D9C17_18240) yhjB 3395064..3396533 (-) 1470 WP_014479374.1 sodium:solute symporter -
  D9C17_RS18245 (D9C17_18245) yhjC 3396530..3396730 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  D9C17_RS18250 (D9C17_18250) - 3396929..3397300 (-) 372 WP_014476361.1 hypothetical protein -
  D9C17_RS18255 (D9C17_18255) yhjE 3397452..3398075 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  D9C17_RS18260 (D9C17_18260) lepB 3398077..3398583 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=319667 D9C17_RS18225 WP_003245329.1 3393012..3393590(+) (comK) [Bacillus subtilis subsp. subtilis strain N2-2]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=319667 D9C17_RS18225 WP_003245329.1 3393012..3393590(+) (comK) [Bacillus subtilis subsp. subtilis strain N2-2]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment