Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FC325_RS16575 Genome accession   NZ_CP040090
Coordinates   3435891..3436496 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain FT130     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3430891..3441496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FC325_RS16555 (FC325_16795) aes 3430928..3431887 (+) 960 WP_000801813.1 acetyl esterase -
  FC325_RS16560 (FC325_16800) hemH 3431884..3432846 (-) 963 WP_001250103.1 ferrochelatase -
  FC325_RS16565 (FC325_16810) adk 3433082..3433726 (-) 645 WP_001220233.1 adenylate kinase -
  FC325_RS16570 (FC325_16815) htpG 3433907..3435781 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  FC325_RS16575 (FC325_16820) recR 3435891..3436496 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FC325_RS16580 (FC325_16825) ybaB 3436496..3436825 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FC325_RS16585 (FC325_16830) dnaX 3436878..3438809 (-) 1932 WP_000122010.1 DNA polymerase III subunit gamma/tau -
  FC325_RS16590 (FC325_16835) apt 3438938..3439489 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FC325_RS16595 (FC325_16840) ybaN 3439642..3440019 (-) 378 WP_001188905.1 DUF454 family protein -
  FC325_RS16600 (FC325_16845) priC 3440089..3440616 (+) 528 WP_000844876.1 primosomal replication protein N'' -
  FC325_RS16605 (FC325_16850) rsmS 3440630..3440791 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  FC325_RS23790 - 3440844..3440942 (-) 99 Protein_3294 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=319640 FC325_RS16575 WP_001195025.1 3435891..3436496(-) (recR) [Escherichia coli strain FT130]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=319640 FC325_RS16575 WP_001195025.1 3435891..3436496(-) (recR) [Escherichia coli strain FT130]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment