Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FC325_RS08645 Genome accession   NZ_CP040090
Coordinates   1831690..1833114 (-) Length   474 a.a.
NCBI ID   WP_057695882.1    Uniprot ID   -
Organism   Escherichia coli strain FT130     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1826690..1838114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FC325_RS08615 (FC325_08700) yeeZ 1826745..1827569 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  FC325_RS08620 (FC325_08705) yeeY 1827615..1828544 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  FC325_RS08625 (FC325_08710) yoeI 1828759..1828821 (+) 63 WP_010723108.1 membrane protein YoeI -
  FC325_RS08630 (FC325_08715) plaP 1828811..1830169 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FC325_RS08635 (FC325_08720) tsuA 1830348..1831406 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  FC325_RS08640 (FC325_08725) tsuB 1831420..1831647 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FC325_RS08645 (FC325_08730) sbcB 1831690..1833114 (-) 1425 WP_057695882.1 exodeoxyribonuclease I Machinery gene
  FC325_RS08650 (FC325_08735) - 1833295..1834473 (+) 1179 WP_024256491.1 site-specific integrase -
  FC325_RS08655 (FC325_08740) - 1834454..1834645 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  FC325_RS08660 (FC325_08745) - 1834986..1835153 (-) 168 WP_112909195.1 hypothetical protein -
  FC325_RS08665 (FC325_08750) - 1835328..1836016 (-) 689 Protein_1714 ead/Ea22-like family protein -
  FC325_RS08670 (FC325_08755) - 1836013..1836483 (-) 471 WP_112909196.1 ead/Ea22-like family protein -
  FC325_RS23845 (FC325_08760) - 1836527..1836724 (-) 198 WP_352053954.1 hypothetical protein -
  FC325_RS08675 (FC325_08765) - 1836706..1837686 (-) 981 WP_000019437.1 IS5-like element ISKpn26 family transposase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54349.63 Da        Isoelectric Point: 5.3498

>NTDB_id=319622 FC325_RS08645 WP_057695882.1 1831690..1833114(-) (sbcB) [Escherichia coli strain FT130]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=319622 FC325_RS08645 WP_057695882.1 1831690..1833114(-) (sbcB) [Escherichia coli strain FT130]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGAGAACCCGAAGTCTTTTACTGCAAGCCCGCTG
ATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTAGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

99.156

0.586