Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   D9C16_RS21555 Genome accession   NZ_CP032861
Coordinates   4014002..4014748 (+) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain N1-1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4009002..4019748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C16_RS21540 (D9C16_21540) - 4009229..4009420 (-) 192 WP_003222590.1 hypothetical protein -
  D9C16_RS21545 (D9C16_21545) valS 4009868..4012510 (+) 2643 WP_014480461.1 valine--tRNA ligase -
  D9C16_RS21550 (D9C16_21550) folC 4012570..4013862 (+) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  D9C16_RS21555 (D9C16_21555) comC 4014002..4014748 (+) 747 WP_072592551.1 A24 family peptidase Machinery gene
  D9C16_RS21560 (D9C16_21560) spoIIB 4014882..4015880 (+) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  D9C16_RS21565 (D9C16_21565) maf 4016033..4016602 (+) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  D9C16_RS21570 (D9C16_21570) radC 4016639..4017334 (+) 696 WP_014480455.1 DNA repair protein RadC -
  D9C16_RS21575 (D9C16_21575) mreB 4017426..4018439 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  D9C16_RS21580 (D9C16_21580) mreC 4018470..4019342 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=319603 D9C16_RS21555 WP_072592551.1 4014002..4014748(+) (comC) [Bacillus subtilis subsp. subtilis strain N1-1]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=319603 D9C16_RS21555 WP_072592551.1 4014002..4014748(+) (comC) [Bacillus subtilis subsp. subtilis strain N1-1]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment