Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   D9C16_RS07910 Genome accession   NZ_CP032861
Coordinates   1411762..1412340 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain N1-1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1406762..1417340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C16_RS07875 (D9C16_07875) lepB 1406769..1407275 (-) 507 WP_003233128.1 signal peptidase I -
  D9C16_RS07880 (D9C16_07880) yhjE 1407277..1407900 (-) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  D9C16_RS07885 (D9C16_07885) - 1408052..1408423 (+) 372 WP_014476361.1 hypothetical protein -
  D9C16_RS07890 (D9C16_07890) yhjC 1408622..1408822 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  D9C16_RS07895 (D9C16_07895) yhjB 1408819..1410288 (+) 1470 WP_014479374.1 sodium:solute symporter -
  D9C16_RS07900 (D9C16_07900) yhjA 1410332..1410601 (-) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  D9C16_RS07905 (D9C16_07905) yhxD 1410818..1411717 (+) 900 WP_014479372.1 SDR family oxidoreductase -
  D9C16_RS07910 (D9C16_07910) comK 1411762..1412340 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  D9C16_RS07915 (D9C16_07915) yhzC 1412633..1412866 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  D9C16_RS07920 (D9C16_07920) yhxC 1412894..1413751 (-) 858 WP_014479371.1 SDR family oxidoreductase -
  D9C16_RS07925 (D9C16_07925) comW 1413855..1415383 (+) 1529 Protein_1576 FAD-dependent oxidoreductase -
  D9C16_RS07930 (D9C16_07930) hemAT 1415522..1416820 (+) 1299 WP_014479367.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=319564 D9C16_RS07910 WP_003245329.1 1411762..1412340(-) (comK) [Bacillus subtilis subsp. subtilis strain N1-1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=319564 D9C16_RS07910 WP_003245329.1 1411762..1412340(-) (comK) [Bacillus subtilis subsp. subtilis strain N1-1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment