Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   D9C16_RS01265 Genome accession   NZ_CP032861
Coordinates   208816..209619 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain N1-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 203816..214619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C16_RS01240 (D9C16_01240) yqxC 203926..204771 (+) 846 WP_031600677.1 TlyA family RNA methyltransferase -
  D9C16_RS01245 (D9C16_01245) argR 204869..205318 (+) 450 WP_003230265.1 arginine repressor ArgR -
  D9C16_RS01250 (D9C16_01250) recN 205355..207085 (+) 1731 WP_014480229.1 DNA repair protein RecN Machinery gene
  D9C16_RS01255 (D9C16_01255) spoIVB 207260..208540 (+) 1281 WP_014480228.1 SpoIVB peptidase -
  D9C16_RS01265 (D9C16_01265) spo0A 208816..209619 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  D9C16_RS01270 (D9C16_01270) yqiG 210084..211202 (-) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  D9C16_RS01275 (D9C16_01275) - 211275..211427 (-) 153 WP_014480226.1 hypothetical protein -
  D9C16_RS01280 (D9C16_01280) - 211735..212031 (+) 297 WP_014480225.1 hypothetical protein -
  D9C16_RS01285 (D9C16_01285) yqiI 212051..212671 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  D9C16_RS01290 (D9C16_01290) glpQB 212750..213481 (+) 732 WP_014480224.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=319546 D9C16_RS01265 WP_003226427.1 208816..209619(+) (spo0A) [Bacillus subtilis subsp. subtilis strain N1-1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=319546 D9C16_RS01265 WP_003226427.1 208816..209619(+) (spo0A) [Bacillus subtilis subsp. subtilis strain N1-1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment