Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   D9C16_RS00720 Genome accession   NZ_CP032861
Coordinates   117384..118151 (+) Length   255 a.a.
NCBI ID   WP_014480292.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain N1-1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 112384..123151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C16_RS00690 (D9C16_00690) pgpH 112681..114815 (+) 2135 Protein_137 cyclic-di-AMP phosphodiesterase PgpH -
  D9C16_RS00695 (D9C16_00695) ybeY 114816..115289 (+) 474 WP_014480295.1 rRNA maturation RNase YbeY -
  D9C16_RS00700 (D9C16_00700) unpK 115270..115641 (+) 372 WP_014480294.1 diacylglycerol kinase family protein -
  D9C16_RS00705 (D9C16_00705) - 115760..116170 (+) 411 WP_014480293.1 cytidine deaminase -
  D9C16_RS00710 (D9C16_00710) era 116151..117056 (+) 906 WP_003230051.1 GTPase Era -
  D9C16_RS00715 (D9C16_00715) yqzL 117204..117347 (+) 144 WP_003230053.1 YqzL family protein -
  D9C16_RS00720 (D9C16_00720) recO 117384..118151 (+) 768 WP_014480292.1 DNA repair protein RecO Machinery gene
  D9C16_RS00725 (D9C16_00725) glyQ 118448..119335 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  D9C16_RS00730 (D9C16_00730) glyS 119328..121367 (+) 2040 WP_014480291.1 glycine--tRNA ligase subunit beta -
  D9C16_RS00735 (D9C16_00735) ccpN 121500..122138 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  D9C16_RS00740 (D9C16_00740) ppsR 122163..122975 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=319535 D9C16_RS00720 WP_014480292.1 117384..118151(+) (recO) [Bacillus subtilis subsp. subtilis strain N1-1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPLKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=319535 D9C16_RS00720 WP_014480292.1 117384..118151(+) (recO) [Bacillus subtilis subsp. subtilis strain N1-1]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAGAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGCTCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment