Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   D9C14_RS21405 Genome accession   NZ_CP032860
Coordinates   4076533..4076868 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis strain SSJ-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4071533..4081868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C14_RS21385 (D9C14_21385) gcvT 4072126..4073214 (-) 1089 WP_015714248.1 glycine cleavage system aminomethyltransferase GcvT -
  D9C14_RS21390 (D9C14_21390) hepAA 4073655..4075328 (+) 1674 WP_029726726.1 SNF2-related protein -
  D9C14_RS21395 (D9C14_21395) yqhG 4075349..4076143 (+) 795 WP_015714249.1 YqhG family protein -
  D9C14_RS21400 (D9C14_21400) sinI 4076326..4076499 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  D9C14_RS21405 (D9C14_21405) sinR 4076533..4076868 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  D9C14_RS21410 (D9C14_21410) tasA 4076961..4077746 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  D9C14_RS21415 (D9C14_21415) sipW 4077810..4078382 (-) 573 WP_072692741.1 signal peptidase I SipW -
  D9C14_RS21420 (D9C14_21420) tapA 4078366..4079127 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  D9C14_RS21425 (D9C14_21425) yqzG 4079399..4079725 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  D9C14_RS21430 (D9C14_21430) spoIITA 4079767..4079946 (-) 180 WP_029726723.1 YqzE family protein -
  D9C14_RS21435 (D9C14_21435) comGG 4080018..4080392 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  D9C14_RS21440 (D9C14_21440) comGF 4080393..4080776 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  D9C14_RS21445 (D9C14_21445) comGE 4080802..4081149 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  D9C14_RS21450 (D9C14_21450) comGD 4081133..4081564 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  D9C14_RS21455 (D9C14_21455) comGC 4081554..4081850 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=319517 D9C14_RS21405 WP_003226345.1 4076533..4076868(+) (sinR) [Bacillus subtilis subsp. subtilis strain SSJ-1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=319517 D9C14_RS21405 WP_003226345.1 4076533..4076868(+) (sinR) [Bacillus subtilis subsp. subtilis strain SSJ-1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
ACAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment