Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   D9C14_RS20225 Genome accession   NZ_CP032860
Coordinates   3864872..3865492 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SSJ-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3859872..3870492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C14_RS20185 (D9C14_20185) ptsA 3861000..3861506 (-) 507 WP_038428153.1 PTS glucose transporter subunit IIA -
  D9C14_RS20190 (D9C14_20190) ypqA 3861644..3862063 (+) 420 WP_029726787.1 Hsp20/alpha crystallin family protein -
  D9C14_RS20195 (D9C14_20195) sppG 3862084..3862461 (-) 378 WP_015251832.1 YppG family protein -
  D9C14_RS20200 (D9C14_20200) yppF 3862649..3862837 (+) 189 WP_003230690.1 YppF family protein -
  D9C14_RS20205 (D9C14_20205) yppE 3862879..3863250 (-) 372 WP_029726786.1 YppE family protein -
  D9C14_RS20210 (D9C14_20210) yppD 3863296..3863541 (-) 246 WP_015251831.1 YppD family protein -
  D9C14_RS20215 (D9C14_20215) sspM 3863740..3863844 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  D9C14_RS20220 (D9C14_20220) yppC 3863869..3864831 (-) 963 WP_029726785.1 DUF2515 domain-containing protein -
  D9C14_RS20225 (D9C14_20225) recU 3864872..3865492 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  D9C14_RS20230 (D9C14_20230) ponA 3865514..3868258 (+) 2745 WP_029726784.1 PBP1A family penicillin-binding protein -
  D9C14_RS20235 (D9C14_20235) ypoC 3868334..3868828 (-) 495 WP_029726783.1 YpoC family protein -
  D9C14_RS20240 (D9C14_20240) nth 3868825..3869484 (-) 660 WP_029726782.1 endonuclease III -
  D9C14_RS20245 (D9C14_20245) dnaD 3869503..3870201 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=319513 D9C14_RS20225 WP_004399067.1 3864872..3865492(+) (recU) [Bacillus subtilis subsp. subtilis strain SSJ-1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=319513 D9C14_RS20225 WP_004399067.1 3864872..3865492(+) (recU) [Bacillus subtilis subsp. subtilis strain SSJ-1]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment