Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   D9C14_RS13690 Genome accession   NZ_CP032860
Coordinates   2626189..2626767 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain SSJ-1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2621189..2631767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C14_RS13670 (D9C14_13670) hemAT 2621700..2622998 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  D9C14_RS13675 (D9C14_13675) comW 2623137..2624666 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  D9C14_RS13680 (D9C14_13680) yhxC 2624778..2625635 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  D9C14_RS13685 (D9C14_13685) yhzC 2625663..2625896 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  D9C14_RS13690 (D9C14_13690) comK 2626189..2626767 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  D9C14_RS13695 (D9C14_13695) yhxD 2626814..2627713 (-) 900 WP_032721273.1 SDR family oxidoreductase -
  D9C14_RS13700 (D9C14_13700) yhjA 2627930..2628199 (+) 270 WP_021479615.1 excalibur calcium-binding domain-containing protein -
  D9C14_RS13705 (D9C14_13705) yhjB 2628242..2629711 (-) 1470 WP_032721274.1 sodium:solute symporter -
  D9C14_RS13710 (D9C14_13710) yhjC 2629708..2629908 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  D9C14_RS13715 (D9C14_13715) - 2630116..2630478 (-) 363 WP_024571727.1 hypothetical protein -
  D9C14_RS13720 (D9C14_13720) yhjE 2630630..2631253 (+) 624 WP_010886465.1 VTT domain-containing protein -
  D9C14_RS13725 (D9C14_13725) lepB 2631255..2631761 (+) 507 WP_032721278.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=319494 D9C14_RS13690 WP_003245329.1 2626189..2626767(+) (comK) [Bacillus subtilis subsp. subtilis strain SSJ-1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=319494 D9C14_RS13690 WP_003245329.1 2626189..2626767(+) (comK) [Bacillus subtilis subsp. subtilis strain SSJ-1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment