Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   D9C14_RS00830 Genome accession   NZ_CP032860
Coordinates   148773..149519 (-) Length   248 a.a.
NCBI ID   WP_072692713.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SSJ-1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143773..154519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C14_RS00805 (D9C14_00805) mreC 144182..145054 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  D9C14_RS00810 (D9C14_00810) mreB 145085..146098 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  D9C14_RS00815 (D9C14_00815) radC 146190..146885 (-) 696 WP_015251546.1 DNA repair protein RadC -
  D9C14_RS00820 (D9C14_00820) maf 146922..147491 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  D9C14_RS00825 (D9C14_00825) spoIIB 147644..148639 (-) 996 WP_038427816.1 stage II sporulation protein SpoIIB -
  D9C14_RS00830 (D9C14_00830) comC 148773..149519 (-) 747 WP_072692713.1 A24 family peptidase Machinery gene
  D9C14_RS00835 (D9C14_00835) folC 149661..150953 (-) 1293 WP_038427817.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  D9C14_RS00840 (D9C14_00840) valS 151013..153655 (-) 2643 WP_029727115.1 valine--tRNA ligase -
  D9C14_RS00845 (D9C14_00845) - 154103..154294 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26453.01 Da        Isoelectric Point: 9.7944

>NTDB_id=319455 D9C14_RS00830 WP_072692713.1 148773..149519(-) (comC) [Bacillus subtilis subsp. subtilis strain SSJ-1]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPATELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=319455 D9C14_RS00830 WP_072692713.1 148773..149519(-) (comC) [Bacillus subtilis subsp. subtilis strain SSJ-1]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAACAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment