Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   D9C12_RS20730 Genome accession   NZ_CP032857
Coordinates   3865878..3866600 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain 2RL2-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3860878..3871600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C12_RS20695 (D9C12_20695) fliW 3861018..3861449 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  D9C12_RS20700 (D9C12_20700) yviE 3861470..3862045 (-) 576 WP_014481045.1 DUF6470 family protein -
  D9C12_RS20705 (D9C12_20705) flgL 3862092..3862988 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  D9C12_RS20710 (D9C12_20710) flgK 3862999..3864522 (-) 1524 WP_014481047.1 flagellar hook-associated protein FlgK -
  D9C12_RS20715 (D9C12_20715) flgN 3864541..3865023 (-) 483 WP_014481048.1 flagellar protein FlgN -
  D9C12_RS20720 (D9C12_20720) flgM 3865039..3865305 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  D9C12_RS20725 (D9C12_20725) yvyF 3865386..3865805 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  D9C12_RS20730 (D9C12_20730) comFC 3865878..3866600 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  D9C12_RS20735 (D9C12_20735) comFB 3866564..3866860 (-) 297 WP_003227989.1 late competence protein ComFB -
  D9C12_RS20740 (D9C12_20740) comFA 3866920..3868311 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  D9C12_RS20745 (D9C12_20745) fakBA 3868418..3869263 (-) 846 WP_014481053.1 DegV family protein -
  D9C12_RS20750 (D9C12_20750) degU 3869361..3870050 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  D9C12_RS20755 (D9C12_20755) degS 3870133..3871290 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=319442 D9C12_RS20730 WP_014481051.1 3865878..3866600(-) (comFC) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=319442 D9C12_RS20730 WP_014481051.1 3865878..3866600(-) (comFC) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment