Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   D9C12_RS14680 Genome accession   NZ_CP032857
Coordinates   2727926..2728996 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis subsp. subtilis strain 2RL2-3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2722926..2733996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C12_RS14635 (D9C12_14635) tapA 2723405..2724166 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  D9C12_RS14640 (D9C12_14640) yqzG 2724438..2724764 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  D9C12_RS14645 (D9C12_14645) spoIITA 2724806..2724985 (-) 180 WP_014480252.1 YqzE family protein -
  D9C12_RS14650 (D9C12_14650) comGG 2725056..2725430 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  D9C12_RS14655 (D9C12_14655) comGF 2725431..2725814 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  D9C12_RS14660 (D9C12_14660) comGE 2725840..2726187 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  D9C12_RS14665 (D9C12_14665) comGD 2726171..2726602 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  D9C12_RS14670 (D9C12_14670) comGC 2726592..2726888 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  D9C12_RS14675 (D9C12_14675) comGB 2726902..2727939 (-) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  D9C12_RS14680 (D9C12_14680) comGA 2727926..2728996 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  D9C12_RS14685 (D9C12_14685) - 2729208..2729405 (-) 198 WP_014480259.1 CBS domain-containing protein -
  D9C12_RS14690 (D9C12_14690) corA 2729407..2730360 (-) 954 WP_014480260.1 magnesium transporter CorA -
  D9C12_RS14695 (D9C12_14695) yqhB 2730502..2731830 (+) 1329 WP_014480261.1 hemolysin family protein -
  D9C12_RS14700 (D9C12_14700) rsbRD 2731883..2732719 (-) 837 WP_014480262.1 RsbT co-antagonist protein RsbRD -
  D9C12_RS14710 (D9C12_14710) mgsR 2732943..2733323 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  D9C12_RS14715 (D9C12_14715) yqgY 2733555..2733800 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -
  D9C12_RS23425 - 2733801..2733941 (+) 141 WP_155118966.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=319422 D9C12_RS14680 WP_004399124.1 2727926..2728996(-) (comGA) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=319422 D9C12_RS14680 WP_004399124.1 2727926..2728996(-) (comGA) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAAGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCAACTGGTTCAGGGAAGACTACCACACTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATTGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGTCGCCAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGGAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment