Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   D9C12_RS13275 Genome accession   NZ_CP032857
Coordinates   2485217..2485837 (+) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis subsp. subtilis strain 2RL2-3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2480217..2490837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C12_RS13235 (D9C12_13235) ptsA 2481349..2481855 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  D9C12_RS13240 (D9C12_13240) ypqA 2481993..2482412 (+) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  D9C12_RS13245 (D9C12_13245) sppG 2482433..2482810 (-) 378 WP_041053169.1 YppG family protein -
  D9C12_RS13250 (D9C12_13250) yppF 2482997..2483185 (+) 189 WP_003230690.1 YppF family protein -
  D9C12_RS13255 (D9C12_13255) yppE 2483224..2483595 (-) 372 WP_003246080.1 YppE family protein -
  D9C12_RS13260 (D9C12_13260) yppD 2483641..2483886 (-) 246 WP_004398488.1 YppD family protein -
  D9C12_RS13265 (D9C12_13265) sspM 2484085..2484189 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  D9C12_RS13270 (D9C12_13270) yppC 2484214..2485176 (-) 963 WP_033881326.1 DUF2515 domain-containing protein -
  D9C12_RS13275 (D9C12_13275) recU 2485217..2485837 (+) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  D9C12_RS13280 (D9C12_13280) ponA 2485859..2488603 (+) 2745 WP_121509418.1 PBP1A family penicillin-binding protein -
  D9C12_RS13285 (D9C12_13285) ypoC 2488679..2489173 (-) 495 WP_009967579.1 YpoC family protein -
  D9C12_RS13290 (D9C12_13290) nth 2489170..2489829 (-) 660 WP_009967580.1 endonuclease III -
  D9C12_RS13295 (D9C12_13295) dnaD 2489848..2490546 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=319411 D9C12_RS13275 WP_014480105.1 2485217..2485837(+) (recU) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=319411 D9C12_RS13275 WP_014480105.1 2485217..2485837(+) (recU) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment