Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   D9C12_RS09645 Genome accession   NZ_CP032857
Coordinates   1826040..1826615 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain 2RL2-3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1821040..1831615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C12_RS09615 (D9C12_09615) dapD 1821228..1821938 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  D9C12_RS09620 (D9C12_09620) dapI 1822008..1823132 (+) 1125 WP_014476668.1 N-acetyldiaminopimelate deacetylase -
  D9C12_RS09625 (D9C12_09625) ykuS 1823194..1823439 (+) 246 WP_003232382.1 YkuS family protein -
  D9C12_RS09630 (D9C12_09630) mscT 1823476..1824279 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  D9C12_RS09635 (D9C12_09635) ahpA 1824516..1825058 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  D9C12_RS09640 (D9C12_09640) ykuV 1825128..1825574 (+) 447 WP_014479665.1 thiol-disulfide oxidoreductase YkuV -
  D9C12_RS09645 (D9C12_09645) rok 1826040..1826615 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  D9C12_RS09655 (D9C12_09655) cse15 1827946..1828911 (-) 966 WP_014479669.1 spore protein Cse15 -
  D9C12_RS09660 (D9C12_09660) mobA 1829048..1829647 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  D9C12_RS09665 (D9C12_09665) moeB 1829698..1830717 (+) 1020 WP_014479671.1 molybdopterin-synthase adenylyltransferase MoeB -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=319405 D9C12_RS09645 WP_003232378.1 1826040..1826615(+) (rok) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=319405 D9C12_RS09645 WP_003232378.1 1826040..1826615(+) (rok) [Bacillus subtilis subsp. subtilis strain 2RL2-3]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment