Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   D9C11_RS19770 Genome accession   NZ_CP032855
Coordinates   3668383..3668661 (+) Length   92 a.a.
NCBI ID   WP_121591763.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain PJ-7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3663383..3673661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C11_RS19745 (D9C11_19745) - 3664029..3665381 (+) 1353 WP_014478984.1 IS1182 family transposase -
  D9C11_RS19755 (D9C11_19755) ampS 3665515..3666747 (-) 1233 WP_121591762.1 aminopeptidase -
  D9C11_RS19760 (D9C11_19760) ykpC 3666857..3666991 (-) 135 WP_003238865.1 protein YkpC -
  D9C11_RS19765 (D9C11_19765) mreBH 3667092..3668099 (-) 1008 WP_026113694.1 cell shape-determining protein MreBH -
  D9C11_RS19770 (D9C11_19770) abrB 3668383..3668661 (+) 279 WP_121591763.1 transcriptional regulator AbhA Regulator
  D9C11_RS19775 (D9C11_19775) kinC 3668851..3670137 (+) 1287 WP_121591764.1 two-component sensor histidine kinase KinC -
  D9C11_RS19780 (D9C11_19780) ykqA 3670153..3670980 (+) 828 WP_121591765.1 gamma-glutamylcyclotransferase -
  D9C11_RS19785 (D9C11_19785) ktrC 3671043..3671708 (+) 666 WP_121591766.1 Ktr system potassium transporter KtrC -
  D9C11_RS19790 (D9C11_19790) ade 3671864..3673597 (+) 1734 WP_121591767.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10284.12 Da        Isoelectric Point: 5.8808

>NTDB_id=319366 D9C11_RS19770 WP_121591763.1 3668383..3668661(+) (abrB) [Bacillus subtilis subsp. subtilis strain PJ-7]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAVLKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=319366 D9C11_RS19770 WP_121591763.1 3668383..3668661(+) (abrB) [Bacillus subtilis subsp. subtilis strain PJ-7]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTGGAAGAAATTCAAGCCGTTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment