Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   D9C11_RS19520 Genome accession   NZ_CP032855
Coordinates   3621946..3622410 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis subsp. subtilis strain PJ-7     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3616946..3627410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C11_RS19500 (D9C11_19500) kinA 3617413..3619233 (+) 1821 WP_121591740.1 sporulation histidine kinase KinA -
  D9C11_RS19505 (D9C11_19505) dapX 3619243..3620424 (-) 1182 WP_121591741.1 aminotransferase A -
  D9C11_RS19510 (D9C11_19510) - 3620626..3620787 (-) 162 WP_003245246.1 hypothetical protein -
  D9C11_RS19515 (D9C11_19515) cheV 3620991..3621902 (+) 912 WP_121591742.1 chemotaxis protein CheV -
  D9C11_RS19520 (D9C11_19520) kre 3621946..3622410 (-) 465 WP_003232406.1 YkyB family protein Regulator
  D9C11_RS19525 (D9C11_19525) ykuC 3622536..3623828 (-) 1293 WP_014479656.1 MFS transporter -
  D9C11_RS19530 (D9C11_19530) ltdD 3623904..3624398 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  D9C11_RS19535 (D9C11_19535) ppeE 3624455..3625315 (-) 861 WP_015483175.1 metallophosphoesterase -
  D9C11_RS19540 (D9C11_19540) fadH 3625458..3626222 (+) 765 WP_121591743.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=319364 D9C11_RS19520 WP_003232406.1 3621946..3622410(-) (kre) [Bacillus subtilis subsp. subtilis strain PJ-7]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=319364 D9C11_RS19520 WP_003232406.1 3621946..3622410(-) (kre) [Bacillus subtilis subsp. subtilis strain PJ-7]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment