Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   D9C11_RS17235 Genome accession   NZ_CP032855
Coordinates   3223630..3224208 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain PJ-7     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3218630..3229208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C11_RS17215 (D9C11_17215) hemAT 3219112..3220410 (-) 1299 WP_121591602.1 heme-based aerotactic transducer HemAT -
  D9C11_RS17220 (D9C11_17220) comW 3220549..3222107 (-) 1559 Protein_3303 FAD-dependent oxidoreductase -
  D9C11_RS17225 (D9C11_17225) yhxC 3222219..3223076 (+) 858 WP_121591603.1 SDR family oxidoreductase -
  D9C11_RS17230 (D9C11_17230) yhzC 3223104..3223337 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  D9C11_RS17235 (D9C11_17235) comK 3223630..3224208 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  D9C11_RS17240 (D9C11_17240) yhxD 3224255..3225154 (-) 900 WP_076457899.1 SDR family oxidoreductase -
  D9C11_RS17245 (D9C11_17245) yhjA 3225371..3225640 (+) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  D9C11_RS17250 (D9C11_17250) yhjB 3225684..3227153 (-) 1470 WP_017695341.1 sodium:solute symporter -
  D9C11_RS17255 (D9C11_17255) yhjC 3227150..3227350 (-) 201 WP_043857242.1 DUF3311 domain-containing protein -
  D9C11_RS17260 (D9C11_17260) - 3227536..3227898 (-) 363 WP_121591604.1 hypothetical protein -
  D9C11_RS17265 (D9C11_17265) yhjE 3228050..3228673 (+) 624 WP_010886465.1 VTT domain-containing protein -
  D9C11_RS17270 (D9C11_17270) lepB 3228675..3229181 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=319352 D9C11_RS17235 WP_003245329.1 3223630..3224208(+) (comK) [Bacillus subtilis subsp. subtilis strain PJ-7]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=319352 D9C11_RS17235 WP_003245329.1 3223630..3224208(+) (comK) [Bacillus subtilis subsp. subtilis strain PJ-7]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment