Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   D9C11_RS09225 Genome accession   NZ_CP032855
Coordinates   1696647..1697792 (+) Length   381 a.a.
NCBI ID   WP_017696253.1    Uniprot ID   A0A0C3JF17
Organism   Bacillus subtilis subsp. subtilis strain PJ-7     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1691647..1702792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C11_RS09200 (D9C11_09200) albF 1691662..1692942 (+) 1281 WP_088272550.1 pitrilysin family protein -
  D9C11_RS09205 (D9C11_09205) albG 1692939..1693640 (+) 702 WP_088272551.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  D9C11_RS09210 (D9C11_09210) ywhL 1693646..1695013 (-) 1368 WP_121591253.1 YncE family protein -
  D9C11_RS09215 (D9C11_09215) ywhK 1695062..1696417 (-) 1356 WP_121591254.1 YncE family protein -
  D9C11_RS24390 (D9C11_09220) - 1696414..1696644 (-) 231 WP_041334639.1 hypothetical protein -
  D9C11_RS09225 (D9C11_09225) rapF 1696647..1697792 (+) 1146 WP_017696253.1 tetratricopeptide repeat protein Regulator
  D9C11_RS09230 (D9C11_09230) - 1697776..1697895 (+) 120 WP_014665774.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  D9C11_RS09235 (D9C11_09235) ywhH 1697994..1698466 (+) 473 Protein_1806 YbaK/EbsC family protein -
  D9C11_RS09240 (D9C11_09240) speB 1698497..1699369 (-) 873 WP_121591255.1 agmatinase -
  D9C11_RS09245 (D9C11_09245) speE 1699430..1700260 (-) 831 WP_003227543.1 spermidine synthase -
  D9C11_RS09250 (D9C11_09250) pbpG 1700463..1702538 (+) 2076 WP_121591256.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45593.24 Da        Isoelectric Point: 5.0684

>NTDB_id=319333 D9C11_RS09225 WP_017696253.1 1696647..1697792(+) (rapF) [Bacillus subtilis subsp. subtilis strain PJ-7]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYVLAIQFFKKAESKLVFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAKTEQQPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIQVFEGSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGKEYSAAAGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=319333 D9C11_RS09225 WP_017696253.1 1696647..1697792(+) (rapF) [Bacillus subtilis subsp. subtilis strain PJ-7]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTTAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCGCCGTGAATATGTATTAGCCATTCAATTCTTTAAAAAAGCTGAGAGCAAGCTGGTTTTTG
TCAAAGATAAAATCGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTCGAAATATACAGTGAACAGACTACATATGATATCAGAATGATTCAATGCCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATACGAAAAAGCAATTGCCCATTTTCAAAAAGCCTTTACACTTGCAAAAA
CAGAGCAGCAGCCCCAATTAATGGGAAGAACACTTTATAACATAGCACTCTGCAAGCAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCAAGTATTTGAAGGATCTAAAATGCTTCCTTCATTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCCTGTGAATATCATAAAAAAGGAAAAGAGTATTCTGCAG
CTGCGGGAGATACCGTGTATCTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGGATA
GAAAAATGTTTTGTTTTTCTTGAAAGTAAAATGATGTATGCAGATATTGAGGACTTCGCACTTGATGTTGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Tetratricopeptide repeat (TPR_8)

(263-290)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3JF17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

80.052

100

0.801
  rapC Bacillus subtilis subsp. subtilis str. 168

57.105

99.738

0.57

Multiple sequence alignment