Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   D9C11_RS03690 Genome accession   NZ_CP032855
Coordinates   627370..628116 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain PJ-7     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 622370..633116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C11_RS03660 (D9C11_03660) - 622698..623132 (+) 435 WP_041055421.1 helix-turn-helix transcriptional regulator -
  D9C11_RS03665 (D9C11_03665) - 623146..623592 (+) 447 WP_041055424.1 ImmA/IrrE family metallo-endopeptidase -
  D9C11_RS03670 (D9C11_03670) - 623623..625059 (+) 1437 WP_162985128.1 recombinase family protein -
  D9C11_RS03675 (D9C11_03675) radC 625078..625479 (-) 402 Protein_726 DNA repair protein RadC -
  D9C11_RS03680 (D9C11_03680) maf 625516..626085 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  D9C11_RS03685 (D9C11_03685) spoIIB 626238..627236 (-) 999 WP_095843864.1 stage II sporulation protein SpoIIB -
  D9C11_RS03690 (D9C11_03690) comC 627370..628116 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  D9C11_RS03695 (D9C11_03695) folC 628256..629548 (-) 1293 WP_121591026.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  D9C11_RS03700 (D9C11_03700) valS 629608..632250 (-) 2643 WP_121591027.1 valine--tRNA ligase -
  D9C11_RS03705 (D9C11_03705) - 632698..632889 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=319313 D9C11_RS03690 WP_072592551.1 627370..628116(-) (comC) [Bacillus subtilis subsp. subtilis strain PJ-7]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=319313 D9C11_RS03690 WP_072592551.1 627370..628116(-) (comC) [Bacillus subtilis subsp. subtilis strain PJ-7]
ATGCTATCCATTCTTTTTATCTTTGGGCTTATTCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCTCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGTTTTGGCACGTCGCTGGAACTGTTTCCAGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment