Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   D9C11_RS02355 Genome accession   NZ_CP032855
Coordinates   398055..398822 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis subsp. subtilis strain PJ-7     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 393055..403822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C11_RS02335 (D9C11_02335) ppsR 393229..394041 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  D9C11_RS02340 (D9C11_02340) ccpN 394067..394705 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  D9C11_RS02345 (D9C11_02345) glyS 394838..396877 (-) 2040 WP_014480291.1 glycine--tRNA ligase subunit beta -
  D9C11_RS02350 (D9C11_02350) glyQ 396870..397757 (-) 888 WP_121591958.1 glycine--tRNA ligase subunit alpha -
  D9C11_RS02355 (D9C11_02355) recO 398055..398822 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  D9C11_RS02360 (D9C11_02360) yqzL 398859..399002 (-) 144 WP_003230053.1 YqzL family protein -
  D9C11_RS02365 (D9C11_02365) era 399150..400055 (-) 906 WP_003230051.1 GTPase Era -
  D9C11_RS02370 (D9C11_02370) - 400036..400446 (-) 411 WP_014480293.1 cytidine deaminase -
  D9C11_RS02375 (D9C11_02375) unpK 400565..400936 (-) 372 WP_014480294.1 diacylglycerol kinase family protein -
  D9C11_RS02380 (D9C11_02380) ybeY 400917..401390 (-) 474 WP_014480295.1 rRNA maturation RNase YbeY -
  D9C11_RS02385 (D9C11_02385) pgpH 401391..403526 (-) 2136 WP_072557183.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=319306 D9C11_RS02355 WP_014477369.1 398055..398822(-) (recO) [Bacillus subtilis subsp. subtilis strain PJ-7]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=319306 D9C11_RS02355 WP_014477369.1 398055..398822(-) (recO) [Bacillus subtilis subsp. subtilis strain PJ-7]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAACC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAGAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996

Multiple sequence alignment