Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   D9C11_RS00775 Genome accession   NZ_CP032855
Coordinates   122583..123203 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain PJ-7     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 117583..128203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C11_RS00735 (D9C11_00735) ptsA 118715..119221 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  D9C11_RS00740 (D9C11_00740) ypqA 119359..119778 (+) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  D9C11_RS00745 (D9C11_00745) sppG 119799..120176 (-) 378 WP_004398696.1 YppG family protein -
  D9C11_RS00750 (D9C11_00750) yppF 120363..120551 (+) 189 WP_003230690.1 YppF family protein -
  D9C11_RS00755 (D9C11_00755) yppE 120590..120961 (-) 372 WP_003246080.1 YppE family protein -
  D9C11_RS00760 (D9C11_00760) yppD 121007..121252 (-) 246 WP_004398488.1 YppD family protein -
  D9C11_RS00765 (D9C11_00765) sspM 121451..121555 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  D9C11_RS00770 (D9C11_00770) yppC 121580..122542 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  D9C11_RS00775 (D9C11_00775) recU 122583..123203 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  D9C11_RS00780 (D9C11_00780) ponA 123225..125969 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  D9C11_RS00785 (D9C11_00785) ypoC 126045..126539 (-) 495 WP_041351582.1 YpoC family protein -
  D9C11_RS00790 (D9C11_00790) nth 126536..127195 (-) 660 WP_009967580.1 endonuclease III -
  D9C11_RS00795 (D9C11_00795) dnaD 127214..127912 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=319294 D9C11_RS00775 WP_004399067.1 122583..123203(+) (recU) [Bacillus subtilis subsp. subtilis strain PJ-7]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=319294 D9C11_RS00775 WP_004399067.1 122583..123203(+) (recU) [Bacillus subtilis subsp. subtilis strain PJ-7]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment