Detailed information NTG0319275

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: D9C10_RS18015
• Genome accession: NZ_CP032853
• Coordinates: 3310080..3311225 (+)
• Length: 381 a.a.
• NCBI ID: WP_069837832.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain MH-1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3305080..3316225

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C10_RS17990 (D9C10_17990)	albF	3305100..3306380 (+)	1281	WP_069837829.1	pitrilysin family protein	-
D9C10_RS17995 (D9C10_17995)	albG	3306377..3307078 (+)	702	WP_069837830.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
D9C10_RS18000 (D9C10_18000)	ywhL	3307084..3308460 (-)	1377	WP_069837831.1	YncE family protein	-
D9C10_RS18005 (D9C10_18005)	ywhK	3308499..3309850 (-)	1352	Protein_3510	YncE family protein	-
D9C10_RS23500 (D9C10_18010)	-	3309847..3310077 (-)	231	Protein_3511	hypothetical protein	-
D9C10_RS18015 (D9C10_18015)	rapF	3310080..3311225 (+)	1146	WP_069837832.1	response regulator aspartate phosphatase RapF	Regulator
D9C10_RS18020 (D9C10_18020)	phrF	3311209..3311328 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
D9C10_RS18025 (D9C10_18025)	-	3311426..3311853 (+)	428	Protein_3514	YbaK/EbsC family protein	-
D9C10_RS18030 (D9C10_18030)	speB	3311918..3312790 (-)	873	WP_003227545.1	agmatinase	-
D9C10_RS18035 (D9C10_18035)	speE	3312851..3313681 (-)	831	WP_003227543.1	spermidine synthase	-
D9C10_RS18040 (D9C10_18040)	pbpG	3313884..3315959 (+)	2076	WP_103330045.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45624.07 Da
• Isoelectric Point: 5.0624

>NTDB_id=319275 D9C10_RS18015 WP_069837832.1 3310080..3311225(+) (rapF) [Bacillus subtilis subsp. subtilis strain MH-1]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFTIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=319275 D9C10_RS18015 WP_069837832.1 3310080..3311225(+) (rapF) [Bacillus subtilis subsp. subtilis strain MH-1]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACAGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACATATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCACTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-290)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	98.688	100	0.987
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57