Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   D9C10_RS12340 Genome accession   NZ_CP032853
Coordinates   2222492..2223238 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain MH-1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2217492..2228238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C10_RS12315 (D9C10_12315) mreC 2217898..2218770 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  D9C10_RS12320 (D9C10_12320) mreB 2218801..2219814 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  D9C10_RS12325 (D9C10_12325) radC 2219906..2220601 (-) 696 WP_014480455.1 DNA repair protein RadC -
  D9C10_RS12330 (D9C10_12330) maf 2220638..2221207 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  D9C10_RS12335 (D9C10_12335) spoIIB 2221360..2222358 (-) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  D9C10_RS12340 (D9C10_12340) comC 2222492..2223238 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  D9C10_RS12345 (D9C10_12345) folC 2223378..2224670 (-) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  D9C10_RS12350 (D9C10_12350) valS 2224730..2227372 (-) 2643 WP_014480461.1 valine--tRNA ligase -
  D9C10_RS12355 (D9C10_12355) - 2227820..2228011 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=319257 D9C10_RS12340 WP_072592551.1 2222492..2223238(-) (comC) [Bacillus subtilis subsp. subtilis strain MH-1]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=319257 D9C10_RS12340 WP_072592551.1 2222492..2223238(-) (comC) [Bacillus subtilis subsp. subtilis strain MH-1]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment