Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   D9C10_RS09545 Genome accession   NZ_CP032853
Coordinates   1735457..1736077 (+) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis subsp. subtilis strain MH-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1730457..1741077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C10_RS09505 (D9C10_09505) ptsA 1731588..1732094 (-) 507 WP_103330270.1 PTS glucose transporter subunit IIA -
  D9C10_RS09510 (D9C10_09510) ypqA 1732232..1732651 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  D9C10_RS09515 (D9C10_09515) sppG 1732672..1733049 (-) 378 WP_015251832.1 YppG family protein -
  D9C10_RS09520 (D9C10_09520) yppF 1733237..1733425 (+) 189 WP_003230690.1 YppF family protein -
  D9C10_RS09525 (D9C10_09525) yppE 1733464..1733835 (-) 372 WP_021481525.1 YppE family protein -
  D9C10_RS09530 (D9C10_09530) yppD 1733881..1734126 (-) 246 WP_021481526.1 DUF5446 family protein -
  D9C10_RS09535 (D9C10_09535) sspM 1734325..1734429 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  D9C10_RS09540 (D9C10_09540) yppC 1734454..1735416 (-) 963 WP_033881326.1 DUF2515 domain-containing protein -
  D9C10_RS09545 (D9C10_09545) recU 1735457..1736077 (+) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  D9C10_RS09550 (D9C10_09550) ponA 1736099..1738843 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  D9C10_RS09555 (D9C10_09555) ypoC 1738919..1739413 (-) 495 WP_009967579.1 YpoC family protein -
  D9C10_RS09560 (D9C10_09560) nth 1739410..1740069 (-) 660 WP_009967580.1 endonuclease III -
  D9C10_RS09565 (D9C10_09565) dnaD 1740088..1740786 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=319238 D9C10_RS09545 WP_014480105.1 1735457..1736077(+) (recU) [Bacillus subtilis subsp. subtilis strain MH-1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=319238 D9C10_RS09545 WP_014480105.1 1735457..1736077(+) (recU) [Bacillus subtilis subsp. subtilis strain MH-1]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment