Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   D9C10_RS03785 Genome accession   NZ_CP032853
Coordinates   695378..695956 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain MH-1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 690378..700956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C10_RS03765 (D9C10_03765) hemAT 690898..692196 (-) 1299 WP_014479367.1 heme-based aerotactic transducer HemAT -
  D9C10_RS03770 (D9C10_03770) comW 692335..693863 (-) 1529 Protein_715 FAD-dependent oxidoreductase -
  D9C10_RS03775 (D9C10_03775) yhxC 693967..694824 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  D9C10_RS03780 (D9C10_03780) yhzC 694852..695085 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  D9C10_RS03785 (D9C10_03785) comK 695378..695956 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  D9C10_RS03790 (D9C10_03790) yhxD 696001..696900 (-) 900 WP_076457899.1 SDR family oxidoreductase -
  D9C10_RS03795 (D9C10_03795) yhjA 697117..697386 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  D9C10_RS03800 (D9C10_03800) yhjB 697430..698899 (-) 1470 WP_014479374.1 sodium:solute symporter -
  D9C10_RS03805 (D9C10_03805) yhjC 698896..699096 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  D9C10_RS03810 (D9C10_03810) - 699295..699666 (-) 372 WP_014476361.1 hypothetical protein -
  D9C10_RS03815 (D9C10_03815) yhjE 699818..700441 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  D9C10_RS03820 (D9C10_03820) lepB 700443..700949 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=319219 D9C10_RS03785 WP_003245329.1 695378..695956(+) (comK) [Bacillus subtilis subsp. subtilis strain MH-1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=319219 D9C10_RS03785 WP_003245329.1 695378..695956(+) (comK) [Bacillus subtilis subsp. subtilis strain MH-1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATATGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment