Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   D9C09_RS20375 Genome accession   NZ_CP032852
Coordinates   3814950..3815594 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain GFR-12     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3809950..3820594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C09_RS20340 (D9C09_20340) mrpB 3811142..3811573 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  D9C09_RS20345 (D9C09_20345) mrpC 3811573..3811914 (+) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  D9C09_RS20350 (D9C09_20350) mrpD 3811907..3813388 (+) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  D9C09_RS20355 (D9C09_20355) mrpE 3813394..3813870 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  D9C09_RS20360 (D9C09_20360) mrpF 3813870..3814154 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  D9C09_RS20365 (D9C09_20365) mnhG 3814138..3814512 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  D9C09_RS20370 (D9C09_20370) yuxO 3814551..3814931 (-) 381 WP_069837723.1 hotdog fold thioesterase -
  D9C09_RS20375 (D9C09_20375) comA 3814950..3815594 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  D9C09_RS20380 (D9C09_20380) comP 3815675..3817987 (-) 2313 WP_014480703.1 sensor histidine kinase Regulator
  D9C09_RS20385 (D9C09_20385) comX 3818003..3818224 (-) 222 WP_014480704.1 competence pheromone ComX -
  D9C09_RS20390 (D9C09_20390) - 3818226..3819089 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  D9C09_RS20395 (D9C09_20395) degQ 3819274..3819414 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  D9C09_RS20400 (D9C09_20400) - 3819636..3819761 (+) 126 WP_003228793.1 hypothetical protein -
  D9C09_RS20405 (D9C09_20405) - 3819876..3820244 (+) 369 WP_046381300.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=319209 D9C09_RS20375 WP_003220716.1 3814950..3815594(-) (comA) [Bacillus subtilis subsp. subtilis strain GFR-12]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=319209 D9C09_RS20375 WP_003220716.1 3814950..3815594(-) (comA) [Bacillus subtilis subsp. subtilis strain GFR-12]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGACTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment