Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   D9C09_RS18380 Genome accession   NZ_CP032852
Coordinates   3419488..3420234 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain GFR-12     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3414488..3425234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C09_RS18355 (D9C09_18355) mreC 3414894..3415766 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  D9C09_RS18360 (D9C09_18360) mreB 3415797..3416810 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  D9C09_RS18365 (D9C09_18365) radC 3416902..3417597 (-) 696 WP_014480455.1 DNA repair protein RadC -
  D9C09_RS18370 (D9C09_18370) maf 3417634..3418203 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  D9C09_RS18375 (D9C09_18375) spoIIB 3418356..3419354 (-) 999 WP_121526181.1 stage II sporulation protein SpoIIB -
  D9C09_RS18380 (D9C09_18380) comC 3419488..3420234 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  D9C09_RS18385 (D9C09_18385) folC 3420374..3421666 (-) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  D9C09_RS18390 (D9C09_18390) valS 3421726..3424368 (-) 2643 WP_014480461.1 valine--tRNA ligase -
  D9C09_RS18395 (D9C09_18395) - 3424816..3425007 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=319204 D9C09_RS18380 WP_072592551.1 3419488..3420234(-) (comC) [Bacillus subtilis subsp. subtilis strain GFR-12]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=319204 D9C09_RS18380 WP_072592551.1 3419488..3420234(-) (comC) [Bacillus subtilis subsp. subtilis strain GFR-12]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment