Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   D9C09_RS17150 Genome accession   NZ_CP032852
Coordinates   3206695..3207462 (-) Length   255 a.a.
NCBI ID   WP_014480292.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain GFR-12     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3201695..3212462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C09_RS17130 (D9C09_17130) ppsR 3201870..3202682 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  D9C09_RS17135 (D9C09_17135) ccpN 3202708..3203346 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  D9C09_RS17140 (D9C09_17140) glyS 3203479..3205518 (-) 2040 WP_014480291.1 glycine--tRNA ligase subunit beta -
  D9C09_RS17145 (D9C09_17145) glyQ 3205511..3206398 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  D9C09_RS17150 (D9C09_17150) recO 3206695..3207462 (-) 768 WP_014480292.1 DNA repair protein RecO Machinery gene
  D9C09_RS17155 (D9C09_17155) yqzL 3207499..3207642 (-) 144 WP_003230053.1 YqzL family protein -
  D9C09_RS17160 (D9C09_17160) era 3207790..3208695 (-) 906 WP_003230051.1 GTPase Era -
  D9C09_RS17165 (D9C09_17165) - 3208676..3209086 (-) 411 WP_014480293.1 cytidine deaminase -
  D9C09_RS17170 (D9C09_17170) unpK 3209205..3209576 (-) 372 WP_014480294.1 diacylglycerol kinase family protein -
  D9C09_RS17175 (D9C09_17175) ybeY 3209557..3210030 (-) 474 WP_014480295.1 rRNA maturation RNase YbeY -
  D9C09_RS17180 (D9C09_17180) pgpH 3210031..3212166 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=319196 D9C09_RS17150 WP_014480292.1 3206695..3207462(-) (recO) [Bacillus subtilis subsp. subtilis strain GFR-12]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPLKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=319196 D9C09_RS17150 WP_014480292.1 3206695..3207462(-) (recO) [Bacillus subtilis subsp. subtilis strain GFR-12]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAGAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGCTCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment