Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D9C09_RS16620 Genome accession   NZ_CP032852
Coordinates   3117783..3119513 (-) Length   576 a.a.
NCBI ID   WP_014480229.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain GFR-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3112783..3124513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C09_RS16590 (D9C09_16590) - 3112837..3113133 (-) 297 WP_014480225.1 hypothetical protein -
  D9C09_RS16595 (D9C09_16595) - 3113441..3113593 (+) 153 WP_014480226.1 hypothetical protein -
  D9C09_RS16600 (D9C09_16600) yqiG 3113666..3114784 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  D9C09_RS16605 (D9C09_16605) spo0A 3115249..3116052 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  D9C09_RS16615 (D9C09_16615) spoIVB 3116328..3117608 (-) 1281 WP_014480228.1 SpoIVB peptidase -
  D9C09_RS16620 (D9C09_16620) recN 3117783..3119513 (-) 1731 WP_014480229.1 DNA repair protein RecN Machinery gene
  D9C09_RS16625 (D9C09_16625) argR 3119550..3119999 (-) 450 WP_003230265.1 arginine repressor ArgR -
  D9C09_RS16630 (D9C09_16630) yqxC 3120097..3120942 (-) 846 WP_031600677.1 TlyA family RNA methyltransferase -
  D9C09_RS16635 (D9C09_16635) dxs 3120939..3122840 (-) 1902 WP_014480232.1 1-deoxy-D-xylulose-5-phosphate synthase -
  D9C09_RS16640 (D9C09_16640) ispA 3123015..3123905 (-) 891 WP_003230262.1 polyprenyl synthetase family protein -
  D9C09_RS16645 (D9C09_16645) xseB 3123895..3124149 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64541.40 Da        Isoelectric Point: 4.7429

>NTDB_id=319186 D9C09_RS16620 WP_014480229.1 3117783..3119513(-) (recN) [Bacillus subtilis subsp. subtilis strain GFR-12]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLELLDKFAGAEVESALK
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKMSESVSNSYYLLEDATFQMRNMLDELEFDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPLVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=319186 D9C09_RS16620 WP_014480229.1 3117783..3119513(-) (recN) [Bacillus subtilis subsp. subtilis strain GFR-12]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCTGTTTTAGGCGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCTTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGACAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCGAGCTTTTGGACAAGTTTGCCGGGGCCGAAGTGGAAAGCGCGCTCAAA
ACGTATCAGGAAGGATACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGTCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAACGAAGATGAACAGCTCC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATATATGAGTCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTTGGAATGGCATCAGCGCAGCTTGAAGATATATCTGATATAAACGAACCGCTGAAAAAAAT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCGGAACGCCTGAACTATATTGAGACGCGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGCTT
GAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTGTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTTGATACGGAATTTAAGGTC
AGAACAGCGTCACGCAATGAAGAGGCTCCGCTTGTAAACGGCCAGCCCGTTCAGCTGACTGAACAAGGGATTGACCTGGT
GAAGTTTTTAATTTCGACCAATACAGGCGAGCCGCTGAAATCCCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCTTCACAACAGGATGTGACATCGATCATTTTTGATGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCAGAGAAGATCCATAAGGTGTCAATAGGATCACAAGTGCTGTGCATTACACACCT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGCTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTCTCTAAGCAGGAAAAGGTAGCGGAAATCGGGCGCATGATTGCAGGTGTCGAAGTAACCGACTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

99.653

100

0.997

Multiple sequence alignment